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Spg037300 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037300
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold7:38922637..38924809
RNA-Seq ExpressionSpg037300
SyntenySpg037300
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.7e-1760.24Show/hide
Query:  DDVCWLHAISQTKLARSSGGG----------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA
        DDVCWLHA+ + K     GGG                +E+FARSA E+GRP+RVGPS+P+KMYGIERLKKL ATVFEGSTDPA
Subjt:  DDVCWLHAISQTKLARSSGGG----------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]3.0e-1746.61Show/hide
Query:  LACLSGSTIQQGQQVSLEEDDVCWLHAISQTKLARSSGGG--------------------------------NEQFARSAQEVGRPKRVGPSDPEKMYGI
        L C     +  G    +  DDVCWLHA+ + K+A S  GG                                +E+FARSAQE+GRP+  GPSDPEKMYGI
Subjt:  LACLSGSTIQQGQQVSLEEDDVCWLHAISQTKLARSSGGG--------------------------------NEQFARSAQEVGRPKRVGPSDPEKMYGI

Query:  ERLKKLGATVFEGSTDPA
        ERLKKLGATVFE STDPA
Subjt:  ERLKKLGATVFEGSTDPA

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]5.1e-1756.82Show/hide
Query:  QGQQVSLEEDDVCWLHAISQTKLARSSGGG------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA
        +G    +  DDVCWLHA+ + K+A   GGG            N+   +SAQE+GRP+R  PSDPEKMYGIERLKKLGATVFEGSTD A
Subjt:  QGQQVSLEEDDVCWLHAISQTKLARSSGGG------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]5.4e-1962.65Show/hide
Query:  DDVCWLHAISQTKLARSSGG----------------GNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA
        DDVCWLHA+ + K     GG                G+E+FARSA E+GRP+RVGPSDP+KMYGIERLKKLGATVFEGSTDPA
Subjt:  DDVCWLHAISQTKLARSSGG----------------GNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]8.6e-1745.38Show/hide
Query:  LEEDDVCWLHAISQTKLARSSGGG---------------------------------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGAT
        + EDDVCWLHA+ + K A   GGG                                       +E+FARSAQE+ RP+R  PSDPEKMYGIERLKKLGAT
Subjt:  LEEDDVCWLHAISQTKLARSSGGG---------------------------------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGAT

Query:  VFEGSTDPACRHRIWSGLI
        VFEGSTDPA   ++W  ++
Subjt:  VFEGSTDPACRHRIWSGLI

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein8.4e-1860.24Show/hide
Query:  DDVCWLHAISQTKLARSSGGG----------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA
        DDVCWLHA+ + K     GGG                +E+FARSA E+GRP+RVGPS+P+KMYGIERLKKL ATVFEGSTDPA
Subjt:  DDVCWLHAISQTKLARSSGGG----------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA

A0A5D3C0X3 Retrotrans_gag domain-containing protein1.4e-1746.61Show/hide
Query:  LACLSGSTIQQGQQVSLEEDDVCWLHAISQTKLARSSGGG--------------------------------NEQFARSAQEVGRPKRVGPSDPEKMYGI
        L C     +  G    +  DDVCWLHA+ + K+A S  GG                                +E+FARSAQE+GRP+  GPSDPEKMYGI
Subjt:  LACLSGSTIQQGQQVSLEEDDVCWLHAISQTKLARSSGGG--------------------------------NEQFARSAQEVGRPKRVGPSDPEKMYGI

Query:  ERLKKLGATVFEGSTDPA
        ERLKKLGATVFE STDPA
Subjt:  ERLKKLGATVFEGSTDPA

A0A5D3CJL4 Retrotrans_gag domain-containing protein2.4e-1756.82Show/hide
Query:  QGQQVSLEEDDVCWLHAISQTKLARSSGGG------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA
        +G    +  DDVCWLHA+ + K+A   GGG            N+   +SAQE+GRP+R  PSDPEKMYGIERLKKLGATVFEGSTD A
Subjt:  QGQQVSLEEDDVCWLHAISQTKLARSSGGG------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA

A0A5D3CJX3 CCHC-type domain-containing protein2.6e-1962.65Show/hide
Query:  DDVCWLHAISQTKLARSSGG----------------GNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA
        DDVCWLHA+ + K     GG                G+E+FARSA E+GRP+RVGPSDP+KMYGIERLKKLGATVFEGSTDPA
Subjt:  DDVCWLHAISQTKLARSSGG----------------GNEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGATVFEGSTDPA

A0A5D3DX39 Reverse transcriptase4.2e-1745.38Show/hide
Query:  LEEDDVCWLHAISQTKLARSSGGG---------------------------------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGAT
        + EDDVCWLHA+ + K A   GGG                                       +E+FARSAQE+ RP+R  PSDPEKMYGIERLKKLGAT
Subjt:  LEEDDVCWLHAISQTKLARSSGGG---------------------------------------NEQFARSAQEVGRPKRVGPSDPEKMYGIERLKKLGAT

Query:  VFEGSTDPACRHRIWSGLI
        VFEGSTDPA   ++W  ++
Subjt:  VFEGSTDPACRHRIWSGLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAACAGAGCACCAAATTTCGTGCAAATCAGGAGGATGTCTGGTTTTCTCTGGTTTCTCGAACGTTCTGGGGTGTACAGGTTGTATTAGAAGCTCCATTTGGCAAAGAGGA
AATAGGCCGAGTCTACAGACTAGAGAACTTGCCAAGACTTGTTCCATATCTAAGATTAGCATGCTTATCAGGTTCAACAATTCAGCAGGGTCAACAGGTATCGTTAGAGG
AGGACGATGTCTGTTGGCTTCACGCCATCTCCCAGACTAAGCTAGCACGTAGTTCGGGAGGGGGAAACGAGCAGTTTGCTAGATCTGCACAGGAGGTCGGTAGGCCAAAG
AGAGTAGGGCCTAGTGATCCGGAAAAGATGTATGGAATAGAACGGTTGAAGAAATTAGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAGCTTGTAGACACCGTATTTG
GTCCGGCTTGATTTTTAGTAATAATATTTGA
mRNA sequenceShow/hide mRNA sequence
AAACAGAGCACCAAATTTCGTGCAAATCAGGAGGATGTCTGGTTTTCTCTGGTTTCTCGAACGTTCTGGGGTGTACAGGTTGTATTAGAAGCTCCATTTGGCAAAGAGGA
AATAGGCCGAGTCTACAGACTAGAGAACTTGCCAAGACTTGTTCCATATCTAAGATTAGCATGCTTATCAGGTTCAACAATTCAGCAGGGTCAACAGGTATCGTTAGAGG
AGGACGATGTCTGTTGGCTTCACGCCATCTCCCAGACTAAGCTAGCACGTAGTTCGGGAGGGGGAAACGAGCAGTTTGCTAGATCTGCACAGGAGGTCGGTAGGCCAAAG
AGAGTAGGGCCTAGTGATCCGGAAAAGATGTATGGAATAGAACGGTTGAAGAAATTAGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAGCTTGTAGACACCGTATTTG
GTCCGGCTTGATTTTTAGTAATAATATTTGA
Protein sequenceShow/hide protein sequence
KQSTKFRANQEDVWFSLVSRTFWGVQVVLEAPFGKEEIGRVYRLENLPRLVPYLRLACLSGSTIQQGQQVSLEEDDVCWLHAISQTKLARSSGGGNEQFARSAQEVGRPK
RVGPSDPEKMYGIERLKKLGATVFEGSTDPACRHRIWSGLIFSNNI