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Spg037307 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037307
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold7:38512879..38513788
RNA-Seq ExpressionSpg037307
SyntenySpg037307
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.1e-1857.14Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWC---------------------------NISVGSTGIDRGDDVCWLHAVFRAKLAGGLG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                            N+SVGSTGI RGDDVCWLHAVFR K A   G
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWC---------------------------NISVGSTGIDRGDDVCWLHAVFRAKLAGGLG

Query:  GGVTS
          VT+
Subjt:  GGVTS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]7.8e-2062.38Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV--------GSTGIDRGDDVCWLHAVFRAKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GI R DDVCWLHAVFRAK AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV--------GSTGIDRGDDVCWLHAVFRAKLAGGLGGG

Query:  V
        V
Subjt:  V

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]9.6e-1859.62Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWC-----------NISVGSTGIDRGDDVCWLHAVFRAKLAGGL
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +            NISV STGI RGDDVCWLHAVFRAK  GG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWC-----------NISVGSTGIDRGDDVCWLHAVFRAKLAGGL

Query:  GGGV
         GGV
Subjt:  GGGV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1649.59Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV------------------------GSTGIDRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW  + +                        GS GI RGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV------------------------GSTGIDRGDDVCW

Query:  LHAVFRAKLAGGLGGGVTSTLNV
        LHAVFRAK AGG  GGVT ++ +
Subjt:  LHAVFRAKLAGGLGGGVTSTLNV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]7.8e-2062.38Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV--------GSTGIDRGDDVCWLHAVFRAKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GI R DDVCWLHAVFRAK AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV--------GSTGIDRGDDVCWLHAVFRAKLAGGLGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein5.5e-1957.14Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWC---------------------------NISVGSTGIDRGDDVCWLHAVFRAKLAGGLG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                            N+SVGSTGI RGDDVCWLHAVFR K A   G
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWC---------------------------NISVGSTGIDRGDDVCWLHAVFRAKLAGGLG

Query:  GGVTS
          VT+
Subjt:  GGVTS

A0A5A7VMG9 Reverse transcriptase3.8e-2062.38Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV--------GSTGIDRGDDVCWLHAVFRAKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GI R DDVCWLHAVFRAK AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV--------GSTGIDRGDDVCWLHAVFRAKLAGGLGGG

Query:  V
        V
Subjt:  V

A0A5D3BMJ4 Retrotrans_gag domain-containing protein4.6e-1859.62Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWC-----------NISVGSTGIDRGDDVCWLHAVFRAKLAGGL
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +            NISV STGI RGDDVCWLHAVFRAK  GG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWC-----------NISVGSTGIDRGDDVCWLHAVFRAKLAGGL

Query:  GGGV
         GGV
Subjt:  GGGV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein8.8e-1749.59Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV------------------------GSTGIDRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW  + +                        GS GI RGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV------------------------GSTGIDRGDDVCW

Query:  LHAVFRAKLAGGLGGGVTSTLNV
        LHAVFRAK AGG  GGVT ++ +
Subjt:  LHAVFRAKLAGGLGGGVTSTLNV

A0A5D3DX39 Reverse transcriptase3.8e-2062.38Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV--------GSTGIDRGDDVCWLHAVFRAKLAGGLGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GI R DDVCWLHAVFRAK AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWCNISV--------GSTGIDRGDDVCWLHAVFRAKLAGGLGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTGCAACATTTCAGTAGGGTCAACAGGGATCGATAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGAG
GGGGTGTGACAAGTACACTCAACGTCAACAACGGAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTGCAACATTTCAGTAGGGTCAACAGGGATCGATAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGAG
GGGGTGTGACAAGTACACTCAACGTCAACAACGGAATCTAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWCNISVGSTGIDRGDDVCWLHAVFRAKLAGGLGGGVTSTLNVNNGI