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Spg037317 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037317
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:274477..279456
RNA-Seq ExpressionSpg037317
SyntenySpg037317
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041962.1 reverse transcriptase [Cucumis melo var. makuwa]4.9e-2361.86Show/hide
Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER
        MS+    GK   +RL+E+EEQ+LYL EVPDS+ FLESHLEEIA KTD IDA++GR++G+ I++LL RV+ LE    R  S ERGDSSTGSVA +EER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER

KAA0045293.1 uncharacterized protein E6C27_scaffold316G00510 [Cucumis melo var. makuwa]8.3e-2363.92Show/hide
Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER
        MS+    GK   +RL E+EEQ+LYL EVPDS+RFLES LE+IA KTD IDAV+GR++G+ I+ELL RV+ LEE   R  S ERGDSSTGSVA +EER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]9.9e-2461.86Show/hide
Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER
        MS TKQ+ K+HV+RL+EIEEQLLYLREVPD +R LE+ ++E + K   IDAV+ R+DG+ I+++ MRVE LE KATRP SFERGDSST    Q+E R
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]3.4e-2462.89Show/hide
Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER
        MSATKQ+ K+HV+RL+EIEEQLLYLREVPDS+R LE+ ++E + K   IDAV+ R+DG+ I+++ MRVE  E KATRP SFERGDSST    Q+E R
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]3.1e-2558.76Show/hide
Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER
        MS TKQ+GK+H++RL+EIEE+LL+LRE+PD++R++ES L+EI+TK D ID V+ R+DG+ I+EL++RVE LE+K  R  + ERG+SS+ S+A MEER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER

TrEMBL top hitse value%identityAlignment
A0A5A7TEV3 Reverse transcriptase2.4e-2361.86Show/hide
Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER
        MS+    GK   +RL+E+EEQ+LYL EVPDS+ FLESHLEEIA KTD IDA++GR++G+ I++LL RV+ LE    R  S ERGDSSTGSVA +EER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER

A0A5A7TP22 Uncharacterized protein4.0e-2363.92Show/hide
Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER
        MS+    GK   +RL E+EEQ+LYL EVPDS+RFLES LE+IA KTD IDAV+GR++G+ I+ELL RV+ LEE   R  S ERGDSSTGSVA +EER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER

A0A6J1D906 Reverse transcriptase4.8e-2461.86Show/hide
Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER
        MS TKQ+ K+HV+RL+EIEEQLLYLREVPD +R LE+ ++E + K   IDAV+ R+DG+ I+++ MRVE LE KATRP SFERGDSST    Q+E R
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER

A0A6J1DK29 uncharacterized protein LOC1110218291.6e-2462.89Show/hide
Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER
        MSATKQ+ K+HV+RL+EIEEQLLYLREVPDS+R LE+ ++E + K   IDAV+ R+DG+ I+++ MRVE  E KATRP SFERGDSST    Q+E R
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER

A0A6J1DLQ6 uncharacterized protein LOC1110223201.5e-2558.76Show/hide
Query:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER
        MS TKQ+GK+H++RL+EIEE+LL+LRE+PD++R++ES L+EI+TK D ID V+ R+DG+ I+EL++RVE LE+K  R  + ERG+SS+ S+A MEER
Subjt:  MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGACAAAGCAGATGGGCAAGACCCATGTCGAACGACTCATAGAAATCGAAGAGCAGCTGCTCTACTTGAGAGAAGTCCCGGATTCAGTTCGGTTCTTGGAATC
TCACCTGGAAGAGATTGCAACCAAGACAGACACAATTGATGCGGTATCTGGCCGCCTGGATGGAATGCACATCAAAGAATTGTTAATGAGGGTTGAGAACCTCGAGGAAA
AAGCTACAAGACCTAGTAGCTTTGAGCGTGGGGACAGCTCGACGGGCTCTGTCGCCCAGATGGAGGAGCGGGCGCCACTTCCCATTCTTGGTATTTTGGTTGAGCCGAGA
CCCAATCTTGCGCTGTCTTTTGTTCACCAAAACACCTTTCTTGCTGGAATTTGGATTTTCTTGATCTCACGCACGTCGTCTTCAACTGACAGCAAGCGTGCAGTTGTCTC
TTGTGGTGAGAGGACGGGGGTAGATTCCGCCTCTTTATCAACCAAAGAAGGATCTCCACTTACATTAGTCGAGACTTTCTTGGTTGTCATGGTAAAAGGCGTCCCGAGAA
TCGAGTGCTCTGATACCAATTTTGATGGAGCCAAAGTAATGAATAACCTCAAGAATATTATTGATCATCAAAATGAAAGGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCGACAAAGCAGATGGGCAAGACCCATGTCGAACGACTCATAGAAATCGAAGAGCAGCTGCTCTACTTGAGAGAAGTCCCGGATTCAGTTCGGTTCTTGGAATC
TCACCTGGAAGAGATTGCAACCAAGACAGACACAATTGATGCGGTATCTGGCCGCCTGGATGGAATGCACATCAAAGAATTGTTAATGAGGGTTGAGAACCTCGAGGAAA
AAGCTACAAGACCTAGTAGCTTTGAGCGTGGGGACAGCTCGACGGGCTCTGTCGCCCAGATGGAGGAGCGGGCGCCACTTCCCATTCTTGGTATTTTGGTTGAGCCGAGA
CCCAATCTTGCGCTGTCTTTTGTTCACCAAAACACCTTTCTTGCTGGAATTTGGATTTTCTTGATCTCACGCACGTCGTCTTCAACTGACAGCAAGCGTGCAGTTGTCTC
TTGTGGTGAGAGGACGGGGGTAGATTCCGCCTCTTTATCAACCAAAGAAGGATCTCCACTTACATTAGTCGAGACTTTCTTGGTTGTCATGGTAAAAGGCGTCCCGAGAA
TCGAGTGCTCTGATACCAATTTTGATGGAGCCAAAGTAATGAATAACCTCAAGAATATTATTGATCATCAAAATGAAAGGCTATGA
Protein sequenceShow/hide protein sequence
MSATKQMGKTHVERLIEIEEQLLYLREVPDSVRFLESHLEEIATKTDTIDAVSGRLDGMHIKELLMRVENLEEKATRPSSFERGDSSTGSVAQMEERAPLPILGILVEPR
PNLALSFVHQNTFLAGIWIFLISRTSSSTDSKRAVVSCGERTGVDSASLSTKEGSPLTLVETFLVVMVKGVPRIECSDTNFDGAKVMNNLKNIIDHQNERL