; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037353 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037353
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPMD domain-containing protein
Genome locationscaffold8:1577587..1580471
RNA-Seq ExpressionSpg037353
SyntenySpg037353
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042086.1 reverse transcriptase [Cucumis melo var. makuwa]7.8e-1639.58Show/hide
Query:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL
        M+EF GEGGA Y+ +  A  HI+K                                           K+     +  +  LQ +N  ELLKDD  L +W 
Subjt:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL

Query:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDL
        +SFF+SIRSCFLSS+CGS MVIE+YSP  FSR+  FYQD+P DL
Subjt:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDL

KAA0060136.1 uncharacterized protein E6C27_scaffold39G00570 [Cucumis melo var. makuwa]6.8e-2043.24Show/hide
Query:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL
        MVEFSGEGGAKY+ + EAR HIH +                                          K+     +  +A LQA+N  ELL DD  L  W 
Subjt:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL

Query:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAV
        +SFFISIR CFL S+ GS  VIE YSPCRF RQFGFYQD+P DL + +
Subjt:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAV

TYK08451.1 uncharacterized protein E5676_scaffold654G00670 [Cucumis melo var. makuwa]1.4e-2043.92Show/hide
Query:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL
        MVEFSGEGGAKY+ + EAR HIHK+                                          K+     +  +A LQA+N  ELL DD  L  W 
Subjt:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL

Query:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAV
        +SFFISIR CFL S+ GS  VIE YSPCRF RQFGFYQD+P DL + +
Subjt:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAV

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]4.3e-2232.96Show/hide
Query:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL
        MVEFSGEGGAKY+ + EAR HIHK                                           K+     +  +A L  +N  ELL DD +L  W 
Subjt:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL

Query:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAVAAIIIRKGLKSPINHQYAKMNLLMEFPAHHNFLNSLHSCPPSFMSPDVFDSV
        +SFFISIRSCFLSS+CGS  VIE YSPCRFSRQFGFYQD+P DL   +          +  N +Y  M  + E     N L+ ++  P S  +PD   + 
Subjt:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAVAAIIIRKGLKSPINHQYAKMNLLMEFPAHHNFLNSLHSCPPSFMSPDVFDSV

Query:  AARVGNFKAPMDRVVTQSCHPVTDEIPGQMKTTT-----HAAASEISDYCADNSKNRQLEETKFSLEKIL
          +V       D +     H +    P  +K+ T     H   S     C+D +  R +E+ +   ++++
Subjt:  AARVGNFKAPMDRVVTQSCHPVTDEIPGQMKTTT-----HAAASEISDYCADNSKNRQLEETKFSLEKIL

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]4.1e-0938.76Show/hide
Query:  SDYCADNSKNRQLEETKFSLEKILYSESELLTTKGILQQQHLQALREEEELEAKLEAVKARRGEISKSIVEKGDL-LKQHQLETSKLQETISSIEDAPVL
        S +   ++K+ QL E K  ++ +   E+ +L      +++  +   +E +LEAKL+ V+A   ++S  I+ K DL LKQ Q E SK  E I  +E AP++
Subjt:  SDYCADNSKNRQLEETKFSLEKILYSESELLTTKGILQQQHLQALREEEELEAKLEAVKARRGEISKSIVEKGDL-LKQHQLETSKLQETISSIEDAPVL

Query:  TDPDAKTLTILRGMLEDAREELKNYKWMP
         D DAK L+ LR  LE   EELKN+KW P
Subjt:  TDPDAKTLTILRGMLEDAREELKNYKWMP

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]4.3e-2232.96Show/hide
Query:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL
        MVEFSGEGGAKY+ + EAR HIHK                                           K+     +  +A L  +N  ELL DD +L  W 
Subjt:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL

Query:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAVAAIIIRKGLKSPINHQYAKMNLLMEFPAHHNFLNSLHSCPPSFMSPDVFDSV
        +SFFISIRSCFLSS+CGS  VIE YSPCRFSRQFGFYQD+P DL   +          +  N +Y  M  + E     N L+ ++  P S  +PD   + 
Subjt:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAVAAIIIRKGLKSPINHQYAKMNLLMEFPAHHNFLNSLHSCPPSFMSPDVFDSV

Query:  AARVGNFKAPMDRVVTQSCHPVTDEIPGQMKTTT-----HAAASEISDYCADNSKNRQLEETKFSLEKIL
          +V       D +     H +    P  +K+ T     H   S     C+D +  R +E+ +   ++++
Subjt:  AARVGNFKAPMDRVVTQSCHPVTDEIPGQMKTTT-----HAAASEISDYCADNSKNRQLEETKFSLEKIL

TrEMBL top hitse value%identityAlignment
A0A5A7TJC9 Reverse transcriptase3.8e-1639.58Show/hide
Query:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL
        M+EF GEGGA Y+ +  A  HI+K                                           K+     +  +  LQ +N  ELLKDD  L +W 
Subjt:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL

Query:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDL
        +SFF+SIRSCFLSS+CGS MVIE+YSP  FSR+  FYQD+P DL
Subjt:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDL

A0A5A7V0Y4 Uncharacterized protein3.3e-2043.24Show/hide
Query:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL
        MVEFSGEGGAKY+ + EAR HIH +                                          K+     +  +A LQA+N  ELL DD  L  W 
Subjt:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL

Query:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAV
        +SFFISIR CFL S+ GS  VIE YSPCRF RQFGFYQD+P DL + +
Subjt:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAV

A0A5A7VHW8 PMD domain-containing protein7.1e-1521.84Show/hide
Query:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL
        M  FSGEGG+ YF ++EAR  IH         GA                                        IQ +A+LQ  +  E + D    SF  
Subjt:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL

Query:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAVAAI----------------------IIRKGLKSPINHQYAK-----------
         S+F+S+RSC+LSSRC +  +I +YSP RF RQFGFYQD+PND+      +                      ++   +  P   +  K           
Subjt:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAVAAI----------------------IIRKGLKSPINHQYAK-----------

Query:  -------MNLLMEFPAHH---NFLNSLH--SCPP------------------SFMSPDVFDSVAARVGNFKAPMDRVVTQSCHP--VTDEI---------
                N   E    H     L++L     PP                  S   P   DS    VG  K P+++   QS  P  + +EI         
Subjt:  -------MNLLMEFPAHH---NFLNSLH--SCPP------------------SFMSPDVFDSVAARVGNFKAPMDRVVTQSCHP--VTDEI---------

Query:  -----PG-----------QMKTTTHAAASEI---------------------------------------------------------------------
             P            Q  ++ HA+ SE+                                                                     
Subjt:  -----PG-----------QMKTTTHAAASEI---------------------------------------------------------------------

Query:  -------------------------SDYCA---DNSKNRQLEETKFSLEKILYSESELLTTKGILQQQHLQALREEEELEAKLEAVKARRGEISKSIVEK
                                 S Y A      K RQL E   +++++L    +L     ++Q++  +   E +ELE +L ++ A   ++S    EK
Subjt:  -------------------------SDYCA---DNSKNRQLEETKFSLEKILYSESELLTTKGILQQQHLQALREEEELEAKLEAVKARRGEISKSIVEK

Query:  GDLLKQHQLETSKLQETISSIEDAPVLTDPDAKTLTILRGMLEDAREELKNYKW
         + + Q +LE +KLQ+ ++++E  P +T+   + L  +R  +E AREE KN+KW
Subjt:  GDLLKQHQLETSKLQETISSIEDAPVLTDPDAKTLTILRGMLEDAREELKNYKW

A0A5D3C9B7 Uncharacterized protein6.6e-2143.92Show/hide
Query:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL
        MVEFSGEGGAKY+ + EAR HIHK+                                          K+     +  +A LQA+N  ELL DD  L  W 
Subjt:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL

Query:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAV
        +SFFISIR CFL S+ GS  VIE YSPCRF RQFGFYQD+P DL + +
Subjt:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAV

A0A5D3D3U4 Reverse transcriptase3.8e-1639.58Show/hide
Query:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL
        M+EF GEGGA Y+ +  A  HI+K                                           K+     +  +  LQ +N  ELLKDD  L +W 
Subjt:  MVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWL

Query:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDL
        +SFF+SIRSCFLSS+CGS MVIE+YSP  FSR+  FYQD+P DL
Subjt:  SSFFISIRSCFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTTGAGTTTTCTGGCGAGGGTGGGGCTAAGTACTTTAATGATTTTGAAGCCCGTGTGCATATTCACAAAGATTATGCTGCTGGGCGACTGGAGGGAGCAAATTC
TGTGCTGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGAATTCTAGAGTATTTTATACTAAATTTTTACTCACTC
TAGGAATCCAACAGTATGCGAGTCTTCAAGCCAGAAATACAGGCGAGCTTCTGAAAGATGACGAGAAATTATCGTTTTGGCTTTCTTCATTCTTCATAAGCATTCGATCG
TGCTTCTTATCTTCACGTTGTGGATCGTTGATGGTTATTGAAGCTTATAGTCCTTGTCGATTTAGTCGACAATTTGGATTCTATCAAGACATACCGAATGACTTGGTCAG
AGCAGTAGCTGCGATCATCATTAGAAAAGGCCTAAAAAGTCCAATCAACCATCAGTATGCGAAGATGAATTTGTTGATGGAGTTCCCAGCGCATCACAATTTCCTGAACT
CCCTGCACAGCTGTCCCCCTTCTTTTATGAGTCCAGACGTTTTTGATTCTGTAGCTGCGCGTGTGGGCAATTTCAAAGCGCCAATGGATAGAGTTGTGACTCAATCTTGT
CATCCTGTAACTGATGAAATTCCTGGACAAATGAAGACAACAACCCATGCAGCTGCGTCTGAGATCTCTGATTATTGTGCTGACAATAGTAAGAATCGCCAATTGGAAGA
GACTAAATTTAGCTTGGAGAAGATACTATATAGTGAAAGTGAACTACTCACGACGAAGGGTATACTTCAGCAACAACATTTGCAAGCATTGCGAGAAGAAGAAGAATTGG
AAGCTAAGCTTGAAGCTGTGAAAGCTAGGCGAGGTGAGATTTCTAAGTCGATTGTCGAGAAGGGGGACCTTTTAAAACAACATCAACTCGAGACTTCCAAACTGCAAGAA
ACTATAAGTAGTATTGAGGATGCCCCTGTTCTTACTGATCCTGATGCTAAAACGCTGACGATACTTCGTGGAATGTTGGAAGATGCACGAGAAGAGCTGAAGAACTACAA
GTGGATGCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTTGAGTTTTCTGGCGAGGGTGGGGCTAAGTACTTTAATGATTTTGAAGCCCGTGTGCATATTCACAAAGATTATGCTGCTGGGCGACTGGAGGGAGCAAATTC
TGTGCTGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGAATTCTAGAGTATTTTATACTAAATTTTTACTCACTC
TAGGAATCCAACAGTATGCGAGTCTTCAAGCCAGAAATACAGGCGAGCTTCTGAAAGATGACGAGAAATTATCGTTTTGGCTTTCTTCATTCTTCATAAGCATTCGATCG
TGCTTCTTATCTTCACGTTGTGGATCGTTGATGGTTATTGAAGCTTATAGTCCTTGTCGATTTAGTCGACAATTTGGATTCTATCAAGACATACCGAATGACTTGGTCAG
AGCAGTAGCTGCGATCATCATTAGAAAAGGCCTAAAAAGTCCAATCAACCATCAGTATGCGAAGATGAATTTGTTGATGGAGTTCCCAGCGCATCACAATTTCCTGAACT
CCCTGCACAGCTGTCCCCCTTCTTTTATGAGTCCAGACGTTTTTGATTCTGTAGCTGCGCGTGTGGGCAATTTCAAAGCGCCAATGGATAGAGTTGTGACTCAATCTTGT
CATCCTGTAACTGATGAAATTCCTGGACAAATGAAGACAACAACCCATGCAGCTGCGTCTGAGATCTCTGATTATTGTGCTGACAATAGTAAGAATCGCCAATTGGAAGA
GACTAAATTTAGCTTGGAGAAGATACTATATAGTGAAAGTGAACTACTCACGACGAAGGGTATACTTCAGCAACAACATTTGCAAGCATTGCGAGAAGAAGAAGAATTGG
AAGCTAAGCTTGAAGCTGTGAAAGCTAGGCGAGGTGAGATTTCTAAGTCGATTGTCGAGAAGGGGGACCTTTTAAAACAACATCAACTCGAGACTTCCAAACTGCAAGAA
ACTATAAGTAGTATTGAGGATGCCCCTGTTCTTACTGATCCTGATGCTAAAACGCTGACGATACTTCGTGGAATGTTGGAAGATGCACGAGAAGAGCTGAAGAACTACAA
GTGGATGCCGTGA
Protein sequenceShow/hide protein sequence
MMVEFSGEGGAKYFNDFEARVHIHKDYAAGRLEGANSVLQQNWEQKLPRHSSLANFMNRLLNSRVFYTKFLLTLGIQQYASLQARNTGELLKDDEKLSFWLSSFFISIRS
CFLSSRCGSLMVIEAYSPCRFSRQFGFYQDIPNDLVRAVAAIIIRKGLKSPINHQYAKMNLLMEFPAHHNFLNSLHSCPPSFMSPDVFDSVAARVGNFKAPMDRVVTQSC
HPVTDEIPGQMKTTTHAAASEISDYCADNSKNRQLEETKFSLEKILYSESELLTTKGILQQQHLQALREEEELEAKLEAVKARRGEISKSIVEKGDLLKQHQLETSKLQE
TISSIEDAPVLTDPDAKTLTILRGMLEDAREELKNYKWMP