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Spg037370 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037370
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D1
Genome locationscaffold8:1059976..1061187
RNA-Seq ExpressionSpg037370
SyntenySpg037370
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005634 - nucleus (cellular component)
GO:0120114 - Sm-like protein family complex (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsIPR010920 - LSM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG1051709.1 hypothetical protein G6F43_006101 [Rhizopus delemar]4.8e-0681.25Show/hide
Query:  CCWFLMKLNNETVSIELKNGTVVHGTITGLHL
        C WFLMKLNNETVS+E+KNGTVVHGTITG+ +
Subjt:  CCWFLMKLNNETVSIELKNGTVVHGTITGLHL

KZV36914.1 hypothetical protein F511_26227, partial [Dorcoceras hygrometricum]2.4e-0559.57Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNMICINPRFDSVKP
        FLMKLNNETVSIELKNGTVVHGTITG+ +    ++  +   F    P
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNMICINPRFDSVKP

RCH95333.1 Small nuclear ribonucleoprotein Sm D1 [Rhizopus azygosporus]8.2e-0684.85Show/hide
Query:  DCCWFLMKLNNETVSIELKNGTVVHGTITGLHL
        DC  FLMKLNNETVSIELKNGTVVHGTITG+ +
Subjt:  DCCWFLMKLNNETVSIELKNGTVVHGTITGLHL

RVW50136.1 Small nuclear ribonucleoprotein SmD1a [Vitis vinifera]2.8e-0671.11Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFT-HNMICINPRFDS
        FLMKLNNETVSIELKNGTVVHGTITGL L F   + +C++  F S
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFT-HNMICINPRFDS

RZC24201.1 Small nuclear ribonucleoprotein SmD1b [Glycine soja]1.8e-0577.14Show/hide
Query:  WDCCW-FLMKLNNETVSIELKNGTVVHGTITGLHL
        W+  W FLMKLNNETVSIELKNGT+VHGTITG+ +
Subjt:  WDCCW-FLMKLNNETVSIELKNGTVVHGTITGLHL

TrEMBL top hitse value%identityAlignment
A0A167L5H6 Small nuclear ribonucleoprotein Sm D11.5e-0586.67Show/hide
Query:  CCWFLMKLNNETVSIELKNGTVVHGTITGL
        CC FLMKLNNETV+IELKNG+VVHGTITG+
Subjt:  CCWFLMKLNNETVSIELKNGTVVHGTITGL

A0A2Z7BR98 Small nuclear ribonucleoprotein Sm D1 (Fragment)1.2e-0559.57Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNMICINPRFDSVKP
        FLMKLNNETVSIELKNGTVVHGTITG+ +    ++  +   F    P
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNMICINPRFDSVKP

A0A367JZG6 Small nuclear ribonucleoprotein Sm D14.0e-0684.85Show/hide
Query:  DCCWFLMKLNNETVSIELKNGTVVHGTITGLHL
        DC  FLMKLNNETVSIELKNGTVVHGTITG+ +
Subjt:  DCCWFLMKLNNETVSIELKNGTVVHGTITGLHL

A0A438EQV6 Small nuclear ribonucleoprotein SmD1a1.4e-0671.11Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFT-HNMICINPRFDS
        FLMKLNNETVSIELKNGTVVHGTITGL L F   + +C++  F S
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFT-HNMICINPRFDS

A0A445LLU6 Small nuclear ribonucleoprotein Sm D18.9e-0677.14Show/hide
Query:  WDCCW-FLMKLNNETVSIELKNGTVVHGTITGLHL
        W+  W FLMKLNNETVSIELKNGT+VHGTITG+ +
Subjt:  WDCCW-FLMKLNNETVSIELKNGTVVHGTITGLHL

SwissProt top hitse value%identityAlignment
O42661 Small nuclear ribonucleoprotein Sm D16.5e-0679.31Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGLHL
        FLMKL NETVSIELKNGT+VHGTIT + +
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGLHL

P62314 Small nuclear ribonucleoprotein Sm D11.5e-0548.94Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNMICINPRFDSVKP
        FLMKL++ETV+IELKNGT VHGTITG+ +    ++  +     + +P
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNMICINPRFDSVKP

Q3ZC10 Small nuclear ribonucleoprotein Sm D11.5e-0548.94Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNMICINPRFDSVKP
        FLMKL++ETV+IELKNGT VHGTITG+ +    ++  +     + +P
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNMICINPRFDSVKP

Q9SSF1 Small nuclear ribonucleoprotein SmD1a2.7e-0796.3Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGL
        FLMKLNNETVSIELKNGTVVHGTITG+
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGL

Q9SY09 Small nuclear ribonucleoprotein SmD1b3.5e-0792.59Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGL
        FLMKLNNETVSIELKNGT+VHGTITG+
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGL

Arabidopsis top hitse value%identityAlignment
AT3G07590.1 Small nuclear ribonucleoprotein family protein1.9e-0896.3Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGL
        FLMKLNNETVSIELKNGTVVHGTITG+
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGL

AT3G07590.2 Small nuclear ribonucleoprotein family protein1.9e-0896.3Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGL
        FLMKLNNETVSIELKNGTVVHGTITG+
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGL

AT4G02840.1 Small nuclear ribonucleoprotein family protein2.5e-0892.59Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGL
        FLMKLNNETVSIELKNGT+VHGTITG+
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGL

AT4G02840.2 Small nuclear ribonucleoprotein family protein2.5e-0859.18Show/hide
Query:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNM---ICINPRFDSVK
        FLMKLNNETVSIELKNGT+VHGTIT  +  F  N    + +N    +VK
Subjt:  FLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNM---ICINPRFDSVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTTGCTCTTTGTACAGGAATACGTCACATTTGGTACGAGATAGGGAGTTTTCTTTTGTCATCCACCAAGGTGGTTTTCTTTCTTTATTTGTGGGATTGTTGTTG
GTTTTTAATGAAGCTCAACAATGAGACTGTCTCAATTGAACTCAAAAATGGAACTGTGGTCCATGGCACTATCACAGGTCTCCATCTCTATTTCACTCACAACATGATTT
GCATAAATCCTAGATTTGATTCTGTTAAACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTTGCTCTTTGTACAGGAATACGTCACATTTGGTACGAGATAGGGAGTTTTCTTTTGTCATCCACCAAGGTGGTTTTCTTTCTTTATTTGTGGGATTGTTGTTG
GTTTTTAATGAAGCTCAACAATGAGACTGTCTCAATTGAACTCAAAAATGGAACTGTGGTCCATGGCACTATCACAGGTCTCCATCTCTATTTCACTCACAACATGATTT
GCATAAATCCTAGATTTGATTCTGTTAAACCCTAG
Protein sequenceShow/hide protein sequence
MLVALCTGIRHIWYEIGSFLLSSTKVVFFLYLWDCCWFLMKLNNETVSIELKNGTVVHGTITGLHLYFTHNMICINPRFDSVKP