CuGenDBv2

Gene ID	Spg037379
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Small nuclear ribonucleoprotein Sm D1
Genome location	scaffold8:1033778..1034998
RNA-Seq Expression	Spg037379
Synteny	Spg037379
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0000243 - commitment complex (cellular component) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0034715 - pICln-Sm protein complex (cellular component) GO:0034719 - SMN-Sm protein complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3

Homology

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GenBank top hits

e value

%identity

Alignment

PHT80497.1 Small nuclear ribonucleoprotein Sm D1 [Capsicum annuum]

5.7e-37

90.11

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Query:  MLFLYYIGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        ++FL +IGVD+SMNTHLKAVK+TLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPRVKPKKPTAG+PLGRGRGRGRGRGRGRGR
Subjt:  MLFLYYIGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

RVW50139.1 Small nuclear ribonucleoprotein SmD1b [Vitis vinifera]

4.4e-37

95.45

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Query:  LYYIGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        LY IGVDISMNTHLK VKLTLKGKNPVTMDHLSVRGNNIRYYILPDS+NLETLLVEETPRVKPKKPTAGRP+GRGRGRGRGRGRGRGR
Subjt:  LYYIGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

XP_004150106.1 small nuclear ribonucleoprotein SmD1b [Cucumis sativus]

9.8e-37

100

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

XP_022931093.1 small nuclear ribonucleoprotein SmD1b [Cucurbita moschata]

2.2e-36

98.81

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+PLGRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

XP_038896756.1 small nuclear ribonucleoprotein SmD1b isoform X2 [Benincasa hispida]

9.8e-37

100

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LD16 Small nuclear ribonucleoprotein Sm D1

4.7e-37

100

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

A0A1S3C0D0 Small nuclear ribonucleoprotein Sm D1

4.7e-37

100

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

A0A2G2ZER7 Small nuclear ribonucleoprotein Sm D1

2.8e-37

90.11

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Query:  MLFLYYIGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        ++FL +IGVD+SMNTHLKAVK+TLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPRVKPKKPTAG+PLGRGRGRGRGRGRGRGR
Subjt:  MLFLYYIGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

A0A438K0T7 Small nuclear ribonucleoprotein SmD1b

2.1e-37

95.45

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Query:  LYYIGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        LY IGVDISMNTHLK VKLTLKGKNPVTMDHLSVRGNNIRYYILPDS+NLETLLVEETPRVKPKKPTAGRP+GRGRGRGRGRGRGRGR
Subjt:  LYYIGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

A0A6J1DVC4 Small nuclear ribonucleoprotein Sm D1

4.7e-37

100

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

SwissProt top hits

e value

%identity

Alignment

P62314 Small nuclear ribonucleoprotein Sm D1

1.2e-24

71.43

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

Q3ZC10 Small nuclear ribonucleoprotein Sm D1

1.2e-24

71.43

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

Q4R5F6 Small nuclear ribonucleoprotein Sm D1

1.2e-24

71.43

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

Q9SSF1 Small nuclear ribonucleoprotein SmD1a

4.3e-35

86.9

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

Q9SY09 Small nuclear ribonucleoprotein SmD1b

5.0e-36

91.67

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRGRGRGRGRGRG
        GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P GRGRGRGRGRGRGRG
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRGRGRGRGRGRG

Arabidopsis top hits

e value

%identity

Alignment

AT3G07590.1 Small nuclear ribonucleoprotein family protein

3.0e-36

86.9

Show/hide

Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

AT3G07590.2 Small nuclear ribonucleoprotein family protein

3.0e-36

86.9

Show/hide

Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR
        GVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ +GRGRGRGRGRGRGRGR
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

AT4G02840.1 Small nuclear ribonucleoprotein family protein

3.6e-37

91.67

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Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRGRGRGRGRGRG
        GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P GRGRGRGRGRGRGRG
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRGRGRGRGRGRG

AT4G02840.2 Small nuclear ribonucleoprotein family protein

3.6e-37

91.67

Show/hide

Query:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRGRGRGRGRGRG
        GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+ P GRGRGRGRGRGRGRG
Subjt:  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-PLGRGRGRGRGRGRGRG

Sequences

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CDS sequence

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ATGCTTTTCTTGTATTACATAGGTGTGGATATTAGCATGAATACACATTTGAAGGCTGTGAAACTTACCCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGT
GAGGGGTAACAACATCAGATATTATATTCTTCCTGACAGCTTGAATCTCGAAACTTTACTAGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAGGC
CTTTGGGACGCGGGCGTGGACGGGGGCGTGGGCGTGGTCGCGGGCGTGGACGCTAG

mRNA sequence

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Protein sequence

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MLFLYYIGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR

Spg037379 (gene) of Sponge gourd (cylindrica) v1 genome