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Spg037393 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037393
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTrafficking protein particle complex subunit 2
Genome locationscaffold8:1459683..1461989
RNA-Seq ExpressionSpg037393
SyntenySpg037393
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFP99703.1 transport protein particle 20 kDa subunit [Phtheirospermum japonicum]2.7e-1853.15Show/hide
Query:  SLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFD
        SLHTRLMLLHDSRNDDGIKSFFQEVHELYIK                                                  T+LNPLYLPGSR+TSSHFD
Subjt:  SLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFD

Query:  TKVRALARKYL
        TKVRALARKYL
Subjt:  TKVRALARKYL

KAF7840160.1 trafficking protein particle complex subunit 2 [Senna tora]1.6e-1851.3Show/hide
Query:  FFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITS
        F D S+HTR MLLHDSRNDDGIKSFFQEVHELYIK+                                                  +LNPLYLPGSRITS
Subjt:  FFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITS

Query:  SHFDTKVRALARKYL
        SHFDTKVRALARKYL
Subjt:  SHFDTKVRALARKYL

KAF8389094.1 hypothetical protein HHK36_025779 [Tetracentron sinense]1.9e-1956.36Show/hide
Query:  LHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDT
        +HTRLMLLHDSRNDDGIKSFFQEVHELYIKV   C L+   H                 +L+                   +LNPLYLPGSRITSSHFDT
Subjt:  LHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDT

Query:  KVRALARKYL
        KVRALARKYL
Subjt:  KVRALARKYL

KAG5602055.1 hypothetical protein H5410_033425 [Solanum commersonii]5.8e-2156.36Show/hide
Query:  LHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDT
        +HTRLMLLHDSRNDDGIKSFFQEVHELYIK+S    L +                                      NLQ +LNPLYLPGSRITSSHFDT
Subjt:  LHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDT

Query:  KVRALARKYL
        KVRALARKYL
Subjt:  KVRALARKYL

VVB05089.1 unnamed protein product [Arabis nemorensis]2.7e-1850.86Show/hide
Query:  FFFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRIT
        FF + S HTRLMLLHDSRN+DGIKSFFQEVHELYIK+                                                  +LNPLYLPGSRIT
Subjt:  FFFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRIT

Query:  SSHFDTKVRALARKYL
        SSHFDTKVRALARKYL
Subjt:  SSHFDTKVRALARKYL

TrEMBL top hitse value%identityAlignment
A0A1S4E319 trafficking protein particle complex subunit 2 isoform X11.7e-1854.55Show/hide
Query:  LHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDT
        LHTRLMLLHDSRNDDGIKSFFQEVHELYIK                                                  TILNPLYLPGSRITSSHFDT
Subjt:  LHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDT

Query:  KVRALARKYL
        KVRALARKYL
Subjt:  KVRALARKYL

A0A565BUM5 Uncharacterized protein1.3e-1850.86Show/hide
Query:  FFFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRIT
        FF + S HTRLMLLHDSRN+DGIKSFFQEVHELYIK+                                                  +LNPLYLPGSRIT
Subjt:  FFFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRIT

Query:  SSHFDTKVRALARKYL
        SSHFDTKVRALARKYL
Subjt:  SSHFDTKVRALARKYL

A0A654ESB3 (thale cress) hypothetical protein1.3e-1850.86Show/hide
Query:  FFFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRIT
        FF + S HTRLMLLHDSRN+DGIKSFFQEVHELYIK+                                                  +LNPLYLPGSRIT
Subjt:  FFFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRIT

Query:  SSHFDTKVRALARKYL
        SSHFDTKVRALARKYL
Subjt:  SSHFDTKVRALARKYL

A0A6A1URR2 Uncharacterized protein1.3e-1858.1Show/hide
Query:  MLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDTKVRAL
        MLLHDSRNDDGIKSFFQ+VHELYIK+  AC       SG+S  K P                  L+ +    +LQ  LNPLYLPGSRITSSHFDTKVR L
Subjt:  MLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDTKVRAL

Query:  ARKYL
        ARKYL
Subjt:  ARKYL

A0A6N2B685 Uncharacterized protein2.2e-1851.79Show/hide
Query:  YSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHF
        Y +HTRLMLLHDSRNDDGIKSFFQEVHELYIK+                                                  +LNPLYLPGSRITSSHF
Subjt:  YSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHF

Query:  DTKVRALARKYL
        DTKVRALARKYL
Subjt:  DTKVRALARKYL

SwissProt top hitse value%identityAlignment
A7RVK7 Probable trafficking protein particle complex subunit 27.1e-0628.23Show/hide
Query:  MSW-----FFFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPL
        +SW     FF D +   R M+LHD +NDDGIK+FF +V+E +IKV                                                  ++NP 
Subjt:  MSW-----FFFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPL

Query:  YLPGSRITSSHFDTKVRALARKYL
        Y   S+I S++FD KV   A+K++
Subjt:  YLPGSRITSSHFDTKVRALARKYL

P0DI81 Trafficking protein particle complex subunit 22.1e-0530.25Show/hide
Query:  WFF--FDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGS
        WF   F  + H R ++LHD R +DGIK+FF +V++LYIK S                                                  +NP Y P S
Subjt:  WFF--FDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGS

Query:  RITSSHFDTKVRALARKYL
         I SS FD KV+ L +K+L
Subjt:  RITSSHFDTKVRALARKYL

P0DI82 Trafficking protein particle complex subunit 2B2.1e-0530.25Show/hide
Query:  WFF--FDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGS
        WF   F  + H R ++LHD R +DGIK+FF +V++LYIK S                                                  +NP Y P S
Subjt:  WFF--FDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGS

Query:  RITSSHFDTKVRALARKYL
         I SS FD KV+ L +K+L
Subjt:  RITSSHFDTKVRALARKYL

Q5RES6 Trafficking protein particle complex subunit 22.1e-0530.25Show/hide
Query:  WFF--FDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGS
        WF   F  + H R ++LHD R +DGIK+FF +V++LYIK S                                                  +NP Y P S
Subjt:  WFF--FDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGS

Query:  RITSSHFDTKVRALARKYL
         I SS FD KV+ L +K+L
Subjt:  RITSSHFDTKVRALARKYL

Q9USZ5 Transport protein particle 20 kDa subunit1.2e-0530.84Show/hide
Query:  RLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDTKVR
        R MLLH +++ D IK FFQE+HELYIK                                                  T+++P Y P   I S  FD KVR
Subjt:  RLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDTKVR

Query:  ALARKYL
        ++AR+YL
Subjt:  ALARKYL

Arabidopsis top hitse value%identityAlignment
AT1G80500.1 SNARE-like superfamily protein8.0e-2151.38Show/hide
Query:  HTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDTK
        HTRLMLLHDSRN+DGIKSFFQEVHELYIK+                                                  +LNPLYLPGSRITSSHFDTK
Subjt:  HTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDTK

Query:  VRALARKYL
        VRALARKYL
Subjt:  VRALARKYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTGGTTTTTCTTTGACTATTCACTACATACGCGGTTGATGTTACTTCATGACTCTCGCAATGATGATGGAATCAAGAGCTTTTTTCAAGAGGTTCATGAGCTTTA
CATAAAGGTAAGTTTGGCATGTTTCTTAGCTAGAGCCGCCCATTCTGGAACCTCCTCAAGCAAGACGCCATCTCTTCGATTGCTTCGAAGTTTTCATTTGGTGACAATTG
TGAACTTGATTATGCTCATGACTGAAAATGGCTTTGTGAATTTGCAGACTATACTTAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAAA
GTCCGTGCACTCGCAAGAAAGTATCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCTGGTTTTTCTTTGACTATTCACTACATACGCGGTTGATGTTACTTCATGACTCTCGCAATGATGATGGAATCAAGAGCTTTTTTCAAGAGGTTCATGAGCTTTA
CATAAAGGTAAGTTTGGCATGTTTCTTAGCTAGAGCCGCCCATTCTGGAACCTCCTCAAGCAAGACGCCATCTCTTCGATTGCTTCGAAGTTTTCATTTGGTGACAATTG
TGAACTTGATTATGCTCATGACTGAAAATGGCTTTGTGAATTTGCAGACTATACTTAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAAA
GTCCGTGCACTCGCAAGAAAGTATCTCTAG
Protein sequenceShow/hide protein sequence
MSWFFFDYSLHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSLACFLARAAHSGTSSSKTPSLRLLRSFHLVTIVNLIMLMTENGFVNLQTILNPLYLPGSRITSSHFDTK
VRALARKYL