; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037396 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037396
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold8:1518813..1522683
RNA-Seq ExpressionSpg037396
SyntenySpg037396
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-3166.4Show/hide
Query:  KEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        +EVDNS + +QRTSVFDRIKP TTR  VFQR+SMA  EEENQC +ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D
Subjt:  KEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSRMKRKFSVLINTKGSL
         K+ S  PSRMKRK SV INT+GSL
Subjt:  KKLQSSNPSRMKRKFSVLINTKGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.8e-3144.21Show/hide
Query:  VLLHFKGSEILESSEILHSHKDKSSEFQSSQAEPKNSERLHQGACTDGKFIVKYNPLFEPDSDIVTVMMTETRTMEERMAEMQE----HINTLMKAVEEK
        V+ H K  +        H H+  S    S + + + ++++ +     G    K     +P   I          +E+   E+ E    H  +++K     
Subjt:  VLLHFKGSEILESSEILHSHKDKSSEFQSSQAEPKNSERLHQGACTDGKFIVKYNPLFEPDSDIVTVMMTETRTMEERMAEMQE----HINTLMKAVEEK

Query:  DSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVK
        DS      +EVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K
Subjt:  DSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVK

Query:  LFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL
         F E N D K+ S  PSRMKRK SV INT+GSL
Subjt:  LFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.8e-3152.54Show/hide
Query:  KYNPLFEPDSDIVTVMMTETRTMEERMAEMQEHINTLMKAVEEKDSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTS
        K     +P   I          +E+   E+ E       ++ E D+      KEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST 
Subjt:  KYNPLFEPDSDIVTVMMTETRTMEERMAEMQEHINTLMKAVEEKDSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTS

Query:  ARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL
        AR S F+RLS+STSKK +PSTS FDRLK+T+DQ +R+M  L+ K F E N D K+ S  PSRMKRK SV INT+GSL
Subjt:  ARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.8e-3166.4Show/hide
Query:  KEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        +EVDNS + +QRTSVFDRIKP TTR  VFQR+SMA  EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T++Q KR+M + + K F E N D
Subjt:  KEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSRMKRKFSVLINTKGSL
         K+ S  PSRMKRK SV INT+GSL
Subjt:  KKLQSSNPSRMKRKFSVLINTKGSL

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]9.8e-3150.28Show/hide
Query:  KYNPLFEPDSDIVTVMMTETRTMEERMAEMQE----HINTLMKAVEEKDSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCS
        K     +P   I          +E+   E+ E    H  ++++     DS      +E+DNS + +Q+TS+FDRIKP TTR SVFQR+SMA  EEENQC 
Subjt:  KYNPLFEPDSDIVTVMMTETRTMEERMAEMQE----HINTLMKAVEEKDSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCS

Query:  VSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL
         ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S  PSRMKRK S+ INTKGSL
Subjt:  VSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein2.1e-3166.4Show/hide
Query:  KEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        +EVDNS + +QRTSVFDRIKP TTR  VFQR+SMA  EEENQC +ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D
Subjt:  KEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSRMKRKFSVLINTKGSL
         K+ S  PSRMKRK SV INT+GSL
Subjt:  KKLQSSNPSRMKRKFSVLINTKGSL

A0A5A7TQ06 Retrotransposon gag protein4.8e-3144.21Show/hide
Query:  VLLHFKGSEILESSEILHSHKDKSSEFQSSQAEPKNSERLHQGACTDGKFIVKYNPLFEPDSDIVTVMMTETRTMEERMAEMQE----HINTLMKAVEEK
        V+ H K  +        H H+  S    S + + + ++++ +     G    K     +P   I          +E+   E+ E    H  +++K     
Subjt:  VLLHFKGSEILESSEILHSHKDKSSEFQSSQAEPKNSERLHQGACTDGKFIVKYNPLFEPDSDIVTVMMTETRTMEERMAEMQE----HINTLMKAVEEK

Query:  DSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVK
        DS      +EVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K
Subjt:  DSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVK

Query:  LFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL
         F E N D K+ S  PSRMKRK SV INT+GSL
Subjt:  LFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL

A0A5A7VDY3 Ty3-gypsy retrotransposon protein4.8e-3152.54Show/hide
Query:  KYNPLFEPDSDIVTVMMTETRTMEERMAEMQEHINTLMKAVEEKDSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTS
        K     +P   I          +E+   E+ E       ++ E D+      KEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST 
Subjt:  KYNPLFEPDSDIVTVMMTETRTMEERMAEMQEHINTLMKAVEEKDSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTS

Query:  ARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL
        AR S F+RLS+STSKK +PSTS FDRLK+T+DQ +R+M  L+ K F E N D K+ S  PSRMKRK SV INT+GSL
Subjt:  ARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL

A0A5D3D209 Retrotransposon gag protein2.8e-3166.4Show/hide
Query:  KEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        +EVDNS + +QRTSVFDRIKP TTR  VFQR+SMA  EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRLK+T++Q KR+M + + K F E N D
Subjt:  KEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSNPSRMKRKFSVLINTKGSL
         K+ S  PSRMKRK SV INT+GSL
Subjt:  KKLQSSNPSRMKRKFSVLINTKGSL

A0A5D3D5Q0 Gag protease polyprotein4.8e-3150.28Show/hide
Query:  KYNPLFEPDSDIVTVMMTETRTMEERMAEMQE----HINTLMKAVEEKDSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCS
        K     +P   I          +E+   E+ E    H  ++++     DS      +E+DNS + +Q+TS+FDRIKP TTR SVFQR+SMA  EEENQC 
Subjt:  KYNPLFEPDSDIVTVMMTETRTMEERMAEMQE----HINTLMKAVEEKDSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCS

Query:  VSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL
         ST AR SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S  PSRMKRK S+ INTKGSL
Subjt:  VSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGCCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAAGGGTTCTCCTCCATTTCAA
GGGTTCAGAAATTTTAGAGAGTTCAGAAATTCTACACTCTCACAAAGACAAGAGTTCAGAGTTTCAAAGCTCTCAAGCAGAACCAAAGAATTCAGAGAGACTCCATCAAG
GGGCATGTACTGATGGCAAGTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAAACAAGAACTATGGAAGAAAGAATG
GCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGGTTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAG
GACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCAGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCG
CTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAG
ATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCAACCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAAA
AGGTTCCTTGAAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCTAAGT
TCGAAGGTTCACACGTTGCGCTGTTCCATCACCAAATTCGAAGGTTCCCACATCGTGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTC
CTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTC
GAAGGTTCACACGTTGCACTGCTTCTTCGCCAAGTTTGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGTTCTCACGCTACATTGCTTCCTTCTCCACGT
TCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGCCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAAGGGTTCTCCTCCATTTCAA
GGGTTCAGAAATTTTAGAGAGTTCAGAAATTCTACACTCTCACAAAGACAAGAGTTCAGAGTTTCAAAGCTCTCAAGCAGAACCAAAGAATTCAGAGAGACTCCATCAAG
GGGCATGTACTGATGGCAAGTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACATAGTGACTGTCATGATGACTGAAACAAGAACTATGGAAGAAAGAATG
GCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGGTTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAG
GACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCAGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCG
CTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAG
ATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCAACCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAAA
AGGTTCCTTGAAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCTAAGT
TCGAAGGTTCACACGTTGCGCTGTTCCATCACCAAATTCGAAGGTTCCCACATCGTGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTC
CTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTC
GAAGGTTCACACGTTGCACTGCTTCTTCGCCAAGTTTGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGTTCTCACGCTACATTGCTTCCTTCTCCACGT
TCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGATGTAA
Protein sequenceShow/hide protein sequence
MVEPKTDKAQAQVVRPESHQGPSSENSINRRVLLHFKGSEILESSEILHSHKDKSSEFQSSQAEPKNSERLHQGACTDGKFIVKYNPLFEPDSDIVTVMMTETRTMEERM
AEMQEHINTLMKAVEEKDSQIAQLKKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRK
MDNLEVKLFDEVNSDKKLQSSNPSRMKRKFSVLINTKGSLKFLLSKFEDSHALRCSPFCSSSKVHTLRCFFAKFEGSHVALFHHQIRRFPHRAVVLLPSPSSKVLTLRCF
LHQVRRFSRCAVSLFRCSFSKFEDSHALRCSSFSSSSKVHTLHCFFAKFEGSHVALFLHQIRRFSRYIASFSTFESSRATLLCLSFSKFEGSALM