CuGenDBv2

Gene ID	Spg037439
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Rab-GTPase-TBC domain containing protein
Genome location	scaffold11:31239739..31243134
RNA-Seq Expression	Spg037439
Synteny	Spg037439
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain IPR035969 - Rab-GTPase-TBC domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6582002.1 TBC1 domain family member 22B, partial [Cucurbita argyrosperma subsp. sororia]

4.8e-67

74.5

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Query:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR
        MKNSGN+SLG EDRQ KESTI +LDSRFNQTLRNVQG                             LLKGRSIPGK+LLTRR+DVLDS+SV +K SNYSR
Subjt:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR

Query:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
        SLS NDTGTSN I K EEED+QII+NN+IVNKS SSTSNTEDL KEVQKP MGARATDSARVMKFT LLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
Subjt:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL

XP_022955794.1 TBC1 domain family member 22B-like [Cucurbita moschata]

1.8e-66

74.5

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Query:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR
        MKNSGN+SLG EDRQ KESTI +LDSRFNQTLRNVQG                             LLKGRSIPGKVLLTR +DVLDS+SV +K SNYSR
Subjt:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR

Query:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
        SLS NDTGTSN I K EEED+QII+NN+IVNKS SSTSNTEDL KEVQKP MGARATDSARVMKFT LLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
Subjt:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL

XP_022980053.1 TBC1 domain family member 22B-like [Cucurbita maxima]

1.6e-67

75.5

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Query:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR
        MKNSGN+SLGGEDRQ KESTI +LDSRFNQTLRNVQG                             LLKGRSIPGKVLLTRR+DVLDS SV  K SNYSR
Subjt:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR

Query:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
        SLS NDTGTSN I K EEED+QII+NN+IVNKS SSTSNTEDL KEVQKP MGARATDSARVMKFT LLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
Subjt:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL

XP_023527117.1 TBC1 domain family member 22B-like [Cucurbita pepo subsp. pepo]

2.4e-66

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Query:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR
        MKNSGN+SLG EDRQ KESTI +LDSRFNQTL+NVQG                             LLKGRSIPGKVLLTRR+DVLDS+SV ++ SNYSR
Subjt:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR

Query:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
        SLS NDTGTSN I K EEED+QII+NN+IVNKS SSTSNTEDL KEVQKP MGARATDSARVMKFT LLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
Subjt:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL

XP_038877768.1 TBC1 domain family member 22B [Benincasa hispida]

2.8e-67

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Query:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR
        MKNSGNNSL GED QRK STI SLDSRFNQTLRNVQG                             LLKGRSIPGKVLLTRRSDVLDS+SV +KS NYSR
Subjt:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR

Query:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
        SLS  DTGTSN I + EEEDVQII+NNTI+NKS SSTSNTEDL KEVQKP MGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
Subjt:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL

TrEMBL top hits

e value

%identity

Alignment

A0A5D3D0M1 TBC1 domain family member 22B

1.9e-61

71.78

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Query:  MKNSG-NNSLGGEDRQRKESTIPS-LDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNY
        MK+SG NNSL GED Q+K+STI S LDSRF+QTLRNVQG                             LLKGRSIPGKVLLTRRSDVL  ++V +KS NY
Subjt:  MKNSG-NNSLGGEDRQRKESTIPS-LDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNY

Query:  SRSLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRL
        SRS S  DTGTSNRI + EEEDVQII NNTI+NKS SSTSNTEDL KEV+KP MGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRL
Subjt:  SRSLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRL

Query:  LL
        LL
Subjt:  LL

A0A6J1EXL8 GTPase-activating protein GYP1-like

2.0e-66

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Query:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR
        MKN+G N+LGGEDRQ K++TI  LDSRFNQTLRNVQG                             LLKGRSIPGKVLLTRRSDV+D +SV EKSSNYSR
Subjt:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR

Query:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
        SLS ND GTSNRI K EEED+QI++NNTIV+KS SSTSNTEDLAKEVQKP MGARATDSARV+KFTKLLSGTTII DKLRELAWSG+PPYMRPNIWRLLL
Subjt:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL

A0A6J1GXA3 TBC1 domain family member 22B-like

8.8e-67

74.5

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Query:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR
        MKNSGN+SLG EDRQ KESTI +LDSRFNQTLRNVQG                             LLKGRSIPGKVLLTR +DVLDS+SV +K SNYSR
Subjt:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR

Query:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
        SLS NDTGTSN I K EEED+QII+NN+IVNKS SSTSNTEDL KEVQKP MGARATDSARVMKFT LLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
Subjt:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL

A0A6J1I530 GTPase-activating protein GYP1-like

9.7e-66

72.5

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Query:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR
        MKN+G N+LGGEDRQ K++TI  LDSRFNQTLRNVQG                             LLKGRSIPGKVLLTRRSDV+D +SV EKSSNY R
Subjt:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR

Query:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
        SLS ND GTSNRI K EEED+QI++NNTIV+KS SSTSNTEDLAKEVQKP MGARATDSARV+KFTKLLSGTTII DKLRELAWSG+PPYMRPNIWRLLL
Subjt:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL

A0A6J1IY45 TBC1 domain family member 22B-like

7.9e-68

75.5

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Query:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR
        MKNSGN+SLGGEDRQ KESTI +LDSRFNQTLRNVQG                             LLKGRSIPGKVLLTRR+DVLDS SV  K SNYSR
Subjt:  MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSR

Query:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
        SLS NDTGTSN I K EEED+QII+NN+IVNKS SSTSNTEDL KEVQKP MGARATDSARVMKFT LLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
Subjt:  SLSVNDTGTSNRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL

SwissProt top hits

e value

%identity

Alignment

Q8R5A6 TBC1 domain family member 22A

6.0e-04

47.62

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Query:  DSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLL
        +++R+ KF +LL+G    L++LR+L+WSGIP  +RP  W+LL
Subjt:  DSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLL

Q8WUA7 TBC1 domain family member 22A

7.8e-04

47.62

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Query:  DSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLL
        +++R+ KF +LL+G    L++LR L+WSGIP  +RP  W+LL
Subjt:  DSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLL

Q95KI1 TBC1 domain family member 22A (Fragment)

6.0e-04

47.62

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Query:  DSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLL
        +++R+ KF +LL+G    L++LR+L+WSGIP  +RP  W+LL
Subjt:  DSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLL

Arabidopsis top hits

e value

%identity

Alignment

AT2G30710.1 Ypt/Rab-GAP domain of gyp1p superfamily protein

1.3e-30

46.15

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Query:  EDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSRSLSVNDTGTSN
        ED Q+K       DSRFNQTL+NVQGF                             LKGRSIPGKVLLTRRSD          S  Y RSLS ND G + 
Subjt:  EDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSRSLSVNDTGTSN

Query:  RITKLEEEDVQIISNNTIVNKSNS------STSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL
           +L E  V++  +N+     N+      S S+ E   KEVQ   +G R++DSARVMKF K+LS TT+IL+KLRELAW+G+P YMRP++WRLLL
Subjt:  RITKLEEEDVQIISNNTIVNKSNS------STSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGAACAGTGGCAATAACAGTTTAGGCGGTGAAGATCGACAAAGAAAAGAGAGCACAATCCCAAGCCTCGATTCCAGATTCAATCAGACCCTCCGAAATGTACAAGG
CTTTGCTAGTACTTCAATTCCTCAACAGTTACCTGGTGGAGTCTACCTTGTTATTGATTATGTCTATTATGTTAGAGGCTGTTGTCTGCTGCTTAAAGGCCGCAGTATTC
CTGGTAAAGTATTGCTGACTAGAAGATCAGATGTGCTAGACTCCGCAAGCGTATTAGAAAAATCATCAAATTATTCAAGGAGCTTGTCCGTTAATGATACTGGTACAAGT
AATCGCATTACCAAATTGGAGGAGGAAGATGTTCAGATTATAAGTAATAATACAATTGTTAATAAGTCAAACTCCTCAACCTCTAACACTGAGGATCTTGCTAAAGAAGT
CCAAAAGCCAACAATGGGTGCTAGGGCAACAGATTCTGCAAGGGTCATGAAGTTCACAAAGTTGCTCTCAGGGACAACAATCATATTAGACAAGTTGCGTGAGCTAGCTT
GGAGTGGCATTCCACCCTATATGCGCCCAAACATATGGAGGCTTCTTTTGTTTATCCACCATGTGGTGGGAGATAAGAGGGCTACTTATTTTTGGGAGGATAGGTGGATT
GGGGATGCTCCCCTTTGCTCTTTGTTTCCCCGTCTATATCAGTTGTCCTCTTTGAGGAATTATTCGGTGGCTACCATTCTTTCTTCTTCTGATAACCAGGTCGGTCTCTC
TCTAGGCTTTCGTAGACCTTTGACTAATAAGGAAATGACAGACATTTTGTCTCTTCTTTTGATGCTTGAGGCCTTTAGTCTTCGTCTTGACATGAGGGACATCCGCTTGT
GGAGTCCTTGCCCTCCCAAGGGTTTTTCGTGCTCCAATCTCTTTCATTGTTTGACTAACTCATCCTTGGGGAGTGGCTTGATTTTCTTTTCATTATGGAAGGTGAAGATT
TCGAAGAAGAATAGATTCTTTGTGTGGCAGGTTTTGCATGGTAGGGTTAATACTCTGGATTGGATTTTGGCTGGAGGGTCCTCTTTGGTTGGCCCGTTCTGTTGTATCCT
TTGTAGGAGGGAGGTTAAGGATCTGGACCACTTGCTTTGGGCTTGTGAGTTTGCCTTGACAGTGGGAGCTTCTTCTTTAGCCGCCCTTCTGTGGCAGAGGGCGCTTTTTG
TGGCAGGCTAG

mRNA sequence

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Protein sequence

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MKNSGNNSLGGEDRQRKESTIPSLDSRFNQTLRNVQGFASTSIPQQLPGGVYLVIDYVYYVRGCCLLLKGRSIPGKVLLTRRSDVLDSASVLEKSSNYSRSLSVNDTGTS
NRITKLEEEDVQIISNNTIVNKSNSSTSNTEDLAKEVQKPTMGARATDSARVMKFTKLLSGTTIILDKLRELAWSGIPPYMRPNIWRLLLFIHHVVGDKRATYFWEDRWI
GDAPLCSLFPRLYQLSSLRNYSVATILSSSDNQVGLSLGFRRPLTNKEMTDILSLLLMLEAFSLRLDMRDIRLWSPCPPKGFSCSNLFHCLTNSSLGSGLIFFSLWKVKI
SKKNRFFVWQVLHGRVNTLDWILAGGSSLVGPFCCILCRREVKDLDHLLWACEFALTVGASSLAALLWQRALFVAG

Spg037439 (gene) of Sponge gourd (cylindrica) v1 genome