; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037467 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037467
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold11:33350094..33350477
RNA-Seq ExpressionSpg037467
SyntenySpg037467
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-0434.65Show/hide
Query:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN
        S   KR+RGS   E +E + ++ E    Q   I DWP  + A E   R  V   L  + +L   +R  LM+ILF   +     LS+P  LKL +C  LL 
Subjt:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN

Query:  D
        +
Subjt:  D

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.8e-0432.67Show/hide
Query:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN
        S   KR++GS   E +E ++++IE    Q   IA+WP  + A E   R  V   L  + +L   +R  L++ILF   +     LS+P   KL +C  LL 
Subjt:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN

Query:  D
        +
Subjt:  D

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-0535.64Show/hide
Query:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN
        S   KR+RGS   E +E +R+++E    Q   IA+WP  +   E   R  V   L  +L+L   +R  LM+ILF   +     LS+P  LKL +C  LL 
Subjt:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN

Query:  D
        +
Subjt:  D

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]2.5e-0637.62Show/hide
Query:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN
        S   KR+RGS   E +E +R+ +E    Q   IADWP  + A E   R +V   L  + KL   +R  LM+ILF   +     LS+P  LKL +C  LL 
Subjt:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN

Query:  D
        +
Subjt:  D

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]3.3e-0634.21Show/hide
Query:  EVPITPISRPNTIEMSQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLS
        ++P TP S+P     S   KR+R  Y  E ++ +RT++ MQT    K+A WP+ ++ K+ + R  V D L  +  L  ++ V L+ IL  + K     L 
Subjt:  EVPITPISRPNTIEMSQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLS

Query:  VPPPLKLRFCRSLL
        VP   K  FC  LL
Subjt:  VPPPLKLRFCRSLL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.2e-0637.62Show/hide
Query:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN
        S   KR+RGS   E +E +R+ +E    Q   IADWP  + A E   R +V   L  + KL   +R  LM+ILF   +     LS+P  LKL +C  LL 
Subjt:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN

Query:  D
        +
Subjt:  D

A0A5A7U0H7 Retrotransposon protein1.2e-0637.62Show/hide
Query:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN
        S   KR+RGS   E +E +R+ +E    Q   IADWP  + A E   R +V   L  + KL   +R  LM+ILF   +     LS+P  LKL +C  LL 
Subjt:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN

Query:  D
        +
Subjt:  D

A0A5D3BZU3 Retrotransposon protein5.1e-0534.65Show/hide
Query:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN
        S   KR+RGS   E +E + ++ E    Q   I DWP  + A E   R  V   L  + +L   +R  LM+ILF   +     LS+P  LKL +C  LL 
Subjt:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN

Query:  D
        +
Subjt:  D

A0A5D3CT52 Retrotransposon protein7.9e-0635.64Show/hide
Query:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN
        S   KR+RGS   E +E +R+++E    Q   IA+WP  +   E   R  V   L  +L+L   +R  LM+ILF   +     LS+P  LKL +C  LL 
Subjt:  SQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSVPPPLKLRFCRSLLN

Query:  D
        +
Subjt:  D

A0A6J1DW73 uncharacterized protein LOC1110250181.6e-0634.21Show/hide
Query:  EVPITPISRPNTIEMSQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLS
        ++P TP S+P     S   KR+R  Y  E ++ +RT++ MQT    K+A WP+ ++ K+ + R  V D L  +  L  ++ V L+ IL  + K     L 
Subjt:  EVPITPISRPNTIEMSQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLS

Query:  VPPPLKLRFCRSLL
        VP   K  FC  LL
Subjt:  VPPPLKLRFCRSLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTGTCGAGGTCGAGTTTTGCGGAAGTTCCCATCACCCCCATCAGCAGGCCGAACACAATCGAGATGTCGCAGGAGAGAAAGAGGAGGAGGGGGTCGTACGAAGT
AGAGGCCCTAGAGACCATGAGAACATCGATTGAAATGCAGACCACTCAGTTCACGAAGATAGCAGACTGGCCAAACTCTCAGGATGCAAAGGAGTCTTCATGTCGTGTTA
GAGTGTCAGATCTGCTCTTAGGGCTTCTTAAGCTGACGGATGATGAGAGAGTGGACCTGATGAAGATTCTCTTCCTAGACCCGAAGATGAAGAACATGTTACTCTCCGTC
CCACCTCCCCTGAAACTTCGATTCTGTCGAAGTTTATTGAATGACTACCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCTGTCGAGGTCGAGTTTTGCGGAAGTTCCCATCACCCCCATCAGCAGGCCGAACACAATCGAGATGTCGCAGGAGAGAAAGAGGAGGAGGGGGTCGTACGAAGT
AGAGGCCCTAGAGACCATGAGAACATCGATTGAAATGCAGACCACTCAGTTCACGAAGATAGCAGACTGGCCAAACTCTCAGGATGCAAAGGAGTCTTCATGTCGTGTTA
GAGTGTCAGATCTGCTCTTAGGGCTTCTTAAGCTGACGGATGATGAGAGAGTGGACCTGATGAAGATTCTCTTCCTAGACCCGAAGATGAAGAACATGTTACTCTCCGTC
CCACCTCCCCTGAAACTTCGATTCTGTCGAAGTTTATTGAATGACTACCGGTGA
Protein sequenceShow/hide protein sequence
MSLSRSSFAEVPITPISRPNTIEMSQERKRRRGSYEVEALETMRTSIEMQTTQFTKIADWPNSQDAKESSCRVRVSDLLLGLLKLTDDERVDLMKILFLDPKMKNMLLSV
PPPLKLRFCRSLLNDYR