; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037497 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037497
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:33243490..33246276
RNA-Seq ExpressionSpg037497
SyntenySpg037497
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]7.7e-0540.28Show/hide
Query:  GGLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHRIQVETDSVDVVKLLNNEDTDLT
        GG+GW+L D  G + +AG   +  K EI  L+ M I+ G      Q    I +E+DSV+V++L+  ED DLT
Subjt:  GGLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHRIQVETDSVDVVKLLNNEDTDLT

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.3e-0436.84Show/hide
Query:  HKGGLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHR-IQVETDSVDVVKLLNNEDTDLTE
        H+GG+GW++R + G + +AG R++     +K+L+  AI+EG  +  +    R + +ETDS +V  LLN +  DLT+
Subjt:  HKGGLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHR-IQVETDSVDVVKLLNNEDTDLTE

TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132163.7e-0540.28Show/hide
Query:  GGLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHRIQVETDSVDVVKLLNNEDTDLT
        GG+GW+L D  G + +AG   +  K EI  L+ M I+ G      Q    I +E+DSV+V++L+  ED DLT
Subjt:  GGLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHRIQVETDSVDVVKLLNNEDTDLT

A0A6J1DNV9 uncharacterized protein LOC1110224031.1e-0436.84Show/hide
Query:  HKGGLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHR-IQVETDSVDVVKLLNNEDTDLTE
        H+GG+GW++R + G + +AG R++     +K+L+  AI+EG  +  +    R + +ETDS +V  LLN +  DLT+
Subjt:  HKGGLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHR-IQVETDSVDVVKLLNNEDTDLTE

A0A7J6GIG6 RNase H domain-containing protein5.4e-0431.03Show/hide
Query:  GLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHRIQVETDSVDVVKLLNNEDTDLTECAKHLARLLAFLPLH
        G+G++ RD+ G V  AGM Y+   C I + +T AIVE        ++  +++++D   VV+ L N++T  ++    L ++ A+L  H
Subjt:  GLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHRIQVETDSVDVVKLLNNEDTDLTECAKHLARLLAFLPLH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAAAATCCTCGAGACCACAAAGGAGGTTTGGGCTGGGTGCTACGTGATTATTTGGGCCGAGTTCGGATAGCAGGAATGAGATATCTCACCCATAAATGTGAGAT
AAAAATCCTCAAGACCATGGCTATTGTAGAAGGATTCTTGTCTTCTATCTCACAAAAATCTCACAGGATTCAAGTGGAAACTGATTCGGTAGATGTGGTCAAGCTGCTTA
ACAATGAAGATACGGATCTTACAGAGTGTGCTAAACACTTGGCCCGGTTGCTTGCTTTCCTCCCTCTGCATTACATCACAGATTCAGTCAACGACGAGAGAGTAGTAGTA
GGATTGGACTCCCTCGGCTGTGGCGGCGAATCTAAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAAAAATCCTCGAGACCACAAAGGAGGTTTGGGCTGGGTGCTACGTGATTATTTGGGCCGAGTTCGGATAGCAGGAATGAGATATCTCACCCATAAATGTGAGAT
AAAAATCCTCAAGACCATGGCTATTGTAGAAGGATTCTTGTCTTCTATCTCACAAAAATCTCACAGGATTCAAGTGGAAACTGATTCGGTAGATGTGGTCAAGCTGCTTA
ACAATGAAGATACGGATCTTACAGAGTGTGCTAAACACTTGGCCCGGTTGCTTGCTTTCCTCCCTCTGCATTACATCACAGATTCAGTCAACGACGAGAGAGTAGTAGTA
GGATTGGACTCCCTCGGCTGTGGCGGCGAATCTAAG
Protein sequenceShow/hide protein sequence
MDKNPRDHKGGLGWVLRDYLGRVRIAGMRYLTHKCEIKILKTMAIVEGFLSSISQKSHRIQVETDSVDVVKLLNNEDTDLTECAKHLARLLAFLPLHYITDSVNDERVVV
GLDSLGCGGESK