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Spg037498 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037498
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:31980339..31981670
RNA-Seq ExpressionSpg037498
SyntenySpg037498
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAP52527.2 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]5.3e-1031.25Show/hide
Query:  KLKSLLSHPP-WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVV
        K + L +H P W     GW KLN D S+  S  +G LG ++R+S   ++   CK + R  +    E  A  EGLK+ +  +       P+ VE D   VV
Subjt:  KLKSLLSHPP-WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVV

Query:  NVLLGESVDLSKSGLIFDEIKQMTKSERVV-FSHCCREVNFLAHKVAHAAAAYGDYSVIFGPSPSLVLEGRVLERN
         +L G   D S    I  E + +   ERV+     CR  N ++H +A+ A A  D+   F    S  L   +L  N
Subjt:  NVLLGESVDLSKSGLIFDEIKQMTKSERVV-FSHCCREVNFLAHKVAHAAAAYGDYSVIFGPSPSLVLEGRVLERN

AAX95581.1 hypothetical protein, partial, partial [Oryza sativa Japonica Group]5.3e-1031.25Show/hide
Query:  KLKSLLSHPP-WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVV
        K + L +H P W     GW KLN D S+  S  +G LG ++R+S   ++   CK + R  +    E  A  EGLK+ +  +       P+ VE D   VV
Subjt:  KLKSLLSHPP-WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVV

Query:  NVLLGESVDLSKSGLIFDEIKQMTKSERVV-FSHCCREVNFLAHKVAHAAAAYGDYSVIFGPSPSLVLEGRVLERN
         +L G   D S    I  E + +   ERV+     CR  N ++H +A+ A A  D+   F    S  L   +L  N
Subjt:  NVLLGESVDLSKSGLIFDEIKQMTKSERVV-FSHCCREVNFLAHKVAHAAAAYGDYSVIFGPSPSLVLEGRVLERN

CAB4279811.1 unnamed protein product [Prunus armeniaca]6.3e-1132.51Show/hide
Query:  KVESTEH---IFWGCKIFRSIA--NFLEQFDRGCRGYLEDSKLKSLLSHPP---------WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGA
        K E  EH   I  G  I   +A   FL Q        +    L + L  PP         WR    G  K+N DA+W +    G +GWV+RDS   +V A
Subjt:  KVESTEH---IFWGCKIFRSIA--NFLEQFDRGCRGYLEDSKLKSLLSHPP---------WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGA

Query:  GCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGE-SVDLSKSGLIFDEIKQMTKSERVVFSHCCREVNFLAHKVAHAAA
        GCK   R  S  A+E  AI+E L   L C  + GL   L VE D+L ++ +L GE ++D++   ++FD  + + + +  VF +  R  N  AHK+    +
Subjt:  GCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGE-SVDLSKSGLIFDEIKQMTKSERVVFSHCCREVNFLAHKVAHAAA

Query:  AYG
          G
Subjt:  AYG

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.2e-1135.14Show/hide
Query:  KSLLSHPPWRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVL
        K+L +   W       W LN DASWS+S  RG +GW+IR     +V AG + +    +++ LE  AI EG    LR     G+  PL +E D+  V ++L
Subjt:  KSLLSHPPWRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVL

Query:  LGESVDLSKSGLIFDEIKQMTKS-ERVVFSHCCREVNFLAHKVAHAAA
          +  DL+K+G + +EI  +  S E + F+   RE N  AH +A  A+
Subjt:  LGESVDLSKSGLIFDEIKQMTKS-ERVVFSHCCREVNFLAHKVAHAAA

XP_024190234.1 uncharacterized protein LOC112194221 [Rosa chinensis]4.1e-1033.33Show/hide
Query:  GKVESTEHIFWGCKIFRSIANFLEQFDRGCRGYLEDSKLKSLLSHPPWRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEA
        G VE ++HI W    +    N  +   R      +D+  K +     WR       KLNTDA+    + + DLG V+RD    L  AG K +    SI A
Subjt:  GKVESTEHIFWGCKIFRSIANFLEQFDRGCRGYLEDSKLKSLLSHPPWRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEA

Query:  LEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGESVDLSKSGLIFDEIKQMTKS-ERVVFSHCCREVNFLAHKVA-HAAAAYGD
        +E  A+  GL +Y     E G +  L+VE D+  V++ L    +DLS  G + D+IK +  + E V +    RE N  AHK+A HA  A  D
Subjt:  LEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGESVDLSKSGLIFDEIKQMTKS-ERVVFSHCCREVNFLAHKVA-HAAAAYGD

TrEMBL top hitse value%identityAlignment
A0A5S6RD54 Uncharacterized protein2.6e-1031.25Show/hide
Query:  KLKSLLSHPP-WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVV
        K + L +H P W     GW KLN D S+  S  +G LG ++R+S   ++   CK + R  +    E  A  EGLK+ +  +       P+ VE D   VV
Subjt:  KLKSLLSHPP-WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVV

Query:  NVLLGESVDLSKSGLIFDEIKQMTKSERVV-FSHCCREVNFLAHKVAHAAAAYGDYSVIFGPSPSLVLEGRVLERN
         +L G   D S    I  E + +   ERV+     CR  N ++H +A+ A A  D+   F    S  L   +L  N
Subjt:  NVLLGESVDLSKSGLIFDEIKQMTKSERVV-FSHCCREVNFLAHKVAHAAAAYGDYSVIFGPSPSLVLEGRVLERN

A0A6J1DNV9 uncharacterized protein LOC1110224031.0e-1135.14Show/hide
Query:  KSLLSHPPWRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVL
        K+L +   W       W LN DASWS+S  RG +GW+IR     +V AG + +    +++ LE  AI EG    LR     G+  PL +E D+  V ++L
Subjt:  KSLLSHPPWRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVL

Query:  LGESVDLSKSGLIFDEIKQMTKS-ERVVFSHCCREVNFLAHKVAHAAA
          +  DL+K+G + +EI  +  S E + F+   RE N  AH +A  A+
Subjt:  LGESVDLSKSGLIFDEIKQMTKS-ERVVFSHCCREVNFLAHKVAHAAA

A0A6J5UV01 Reverse transcriptase domain-containing protein3.0e-1132.51Show/hide
Query:  KVESTEH---IFWGCKIFRSIA--NFLEQFDRGCRGYLEDSKLKSLLSHPP---------WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGA
        K E  EH   I  G  I   +A   FL Q        +    L + L  PP         WR    G  K+N DA+W +    G +GWV+RDS   +V A
Subjt:  KVESTEH---IFWGCKIFRSIA--NFLEQFDRGCRGYLEDSKLKSLLSHPP---------WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGA

Query:  GCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGE-SVDLSKSGLIFDEIKQMTKSERVVFSHCCREVNFLAHKVAHAAA
        GCK   R  S  A+E  AI+E L   L C  + GL   L VE D+L ++ +L GE ++D++   ++FD  + + + +  VF +  R  N  AHK+    +
Subjt:  GCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGE-SVDLSKSGLIFDEIKQMTKSERVVFSHCCREVNFLAHKVAHAAA

Query:  AYG
          G
Subjt:  AYG

A0A803MUM1 Uncharacterized protein2.3e-1128.95Show/hide
Query:  ESTEHIFWGCKIFRSI----------ANFLEQFD-RGCRGYLEDSKLKSLLSHPPWRSSDRGWWKLNTDASWS----------NSELRGDLGWVIRDSTE
        ES  H  WGCK+   +           NF E  D  G    L+D + +S +    W      W + N  A+ +            E   D+G V+RD   
Subjt:  ESTEHIFWGCKIFRSI----------ANFLEQFD-RGCRGYLEDSKLKSLLSHPPWRSSDRGWWKLNTDASWS----------NSELRGDLGWVIRDSTE

Query:  SLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGESVDLSKSGLIFDEIKQMTK-SERVVFSHCCREVNFLAHKV
         +V AGC+Q+H+ W    +E  A+  GLK+ ++C+ +      ++VE D   +V ++ G   D S  GL+  EIK + +  + +VF+H  RE N +AH +
Subjt:  SLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGESVDLSKSGLIFDEIKQMTK-SERVVFSHCCREVNFLAHKV

Query:  AHAAAAYGDYSVIFGPSPSLVLEGRVLE
        AH +       V     PS+V +   LE
Subjt:  AHAAAAYGDYSVIFGPSPSLVLEGRVLE

Q94HY0 Retrotransposon protein, putative, unclassified2.6e-1031.25Show/hide
Query:  KLKSLLSHPP-WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVV
        K + L +H P W     GW KLN D S+  S  +G LG ++R+S   ++   CK + R  +    E  A  EGLK+ +  +       P+ VE D   VV
Subjt:  KLKSLLSHPP-WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVV

Query:  NVLLGESVDLSKSGLIFDEIKQMTKSERVV-FSHCCREVNFLAHKVAHAAAAYGDYSVIFGPSPSLVLEGRVLERN
         +L G   D S    I  E + +   ERV+     CR  N ++H +A+ A A  D+   F    S  L   +L  N
Subjt:  NVLLGESVDLSKSGLIFDEIKQMTKSERVV-FSHCCREVNFLAHKVAHAAAAYGDYSVIFGPSPSLVLEGRVLERN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-0637.68Show/hide
Query:  ANFLEQFDRGCRGYLEDSKLKSLLSHPPWRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAG
        AN + Q +   RG  E+       +H  WR  +RGW K N D S+ N +++   GWV+RDS  S + AG
Subjt:  ANFLEQFDRGCRGYLEDSKLKSLLSHPPWRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAG

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.2e-0622.22Show/hide
Query:  WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGESVDLS
        W++    W K NTDA+W     R  +GW++R+ +  ++  G + + R  ++   E +A++  +    R + +      ++ E DA  +VN+L  +    +
Subjt:  WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGESVDLS

Query:  KSGLIFDEIKQMTKSERVVFSHCCREVNFLAHKVAHAAAAYGDY
            + D  + +   E V F    R  N +A ++A  + ++ +Y
Subjt:  KSGLIFDEIKQMTKSERVVFSHCCREVNFLAHKVAHAAAAYGDY

AT4G29090.1 Ribonuclease H-like superfamily protein2.9e-0624.31Show/hide
Query:  WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGESVDLS
        WR     W K NTDA+W+    R  +GWV+R+    +   G + + +  S+   E +A++  +    R          ++ E D+  ++ +L  + +  S
Subjt:  WRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLLGESVDLS

Query:  KSGLIFDEIKQMTKSERVVFSHCCREVNFLAHKVAHAAAAYGDY
            I D  + +++   V F    RE N LA +VA  + ++ +Y
Subjt:  KSGLIFDEIKQMTKSERVVFSHCCREVNFLAHKVAHAAAAYGDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACGGGCAATCGATTTCCTATTTGGGTCAACGAGGACCTTAAAGGGAAAAGAGTTGATAACCTCCTTGATAGGGAAGGGAAGTGGTGCGAAAGTCTTGTGTTTGAA
TCCTTCTACAAAGAGGATGCAGAAGCTATTCTCAGCATTCACAGAGGAGGGTGAAACTCCAGCAATGACATCATTTGGAACTCGGAGGCTAAAGGCTCTTTCTCTGTTAA
AAGTGCTTATAACCTTGCGGGGAAAAGTGGAGTCTACTGAGCACATTTTCTGGGGCTGTAAGATTTTCAGATCGATTGCAAATTTTCTTGAGCAATTCGATAGAGGGTGT
AGAGGTTACCTGGAGGATTCAAAGCTGAAGAGCCTGTTGAGTCACCCTCCTTGGAGGTCGTCGGATCGTGGTTGGTGGAAGCTCAATACCGATGCCTCTTGGAGCAATTC
TGAGTTGAGGGGCGATTTGGGTTGGGTAATTCGTGACTCAACCGAATCTTTAGTTGGAGCAGGCTGCAAACAAATTCATCGCAAATGGTCAATCGAAGCCCTCGAAGGAG
ATGCAATCCAGGAAGGGTTGAAGGTGTACCTGCGATGCTCGAACGAGGAGGGACTCAGACCTCCTCTGATGGTCGAATTGGACGCTCTCGGTGTCGTTAATGTGCTATTA
GGAGAGAGTGTTGATCTTTCCAAATCGGGGCTCATTTTCGATGAGATCAAGCAGATGACGAAGAGCGAAAGAGTTGTTTTCTCCCATTGTTGTAGGGAAGTTAATTTTTT
GGCCCACAAGGTTGCTCATGCAGCTGCTGCTTATGGGGATTATTCTGTTATTTTTGGTCCCTCTCCTTCCCTTGTTTTGGAAGGTAGAGTGCTTGAAAGGAATGAGAGTA
TCCCTTGTTGGTTTTCTTCTTTGTTTGTTGTGAACGTTGGTAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACGGGCAATCGATTTCCTATTTGGGTCAACGAGGACCTTAAAGGGAAAAGAGTTGATAACCTCCTTGATAGGGAAGGGAAGTGGTGCGAAAGTCTTGTGTTTGAA
TCCTTCTACAAAGAGGATGCAGAAGCTATTCTCAGCATTCACAGAGGAGGGTGAAACTCCAGCAATGACATCATTTGGAACTCGGAGGCTAAAGGCTCTTTCTCTGTTAA
AAGTGCTTATAACCTTGCGGGGAAAAGTGGAGTCTACTGAGCACATTTTCTGGGGCTGTAAGATTTTCAGATCGATTGCAAATTTTCTTGAGCAATTCGATAGAGGGTGT
AGAGGTTACCTGGAGGATTCAAAGCTGAAGAGCCTGTTGAGTCACCCTCCTTGGAGGTCGTCGGATCGTGGTTGGTGGAAGCTCAATACCGATGCCTCTTGGAGCAATTC
TGAGTTGAGGGGCGATTTGGGTTGGGTAATTCGTGACTCAACCGAATCTTTAGTTGGAGCAGGCTGCAAACAAATTCATCGCAAATGGTCAATCGAAGCCCTCGAAGGAG
ATGCAATCCAGGAAGGGTTGAAGGTGTACCTGCGATGCTCGAACGAGGAGGGACTCAGACCTCCTCTGATGGTCGAATTGGACGCTCTCGGTGTCGTTAATGTGCTATTA
GGAGAGAGTGTTGATCTTTCCAAATCGGGGCTCATTTTCGATGAGATCAAGCAGATGACGAAGAGCGAAAGAGTTGTTTTCTCCCATTGTTGTAGGGAAGTTAATTTTTT
GGCCCACAAGGTTGCTCATGCAGCTGCTGCTTATGGGGATTATTCTGTTATTTTTGGTCCCTCTCCTTCCCTTGTTTTGGAAGGTAGAGTGCTTGAAAGGAATGAGAGTA
TCCCTTGTTGGTTTTCTTCTTTGTTTGTTGTGAACGTTGGTAGTTGA
Protein sequenceShow/hide protein sequence
MERAIDFLFGSTRTLKGKELITSLIGKGSGAKVLCLNPSTKRMQKLFSAFTEEGETPAMTSFGTRRLKALSLLKVLITLRGKVESTEHIFWGCKIFRSIANFLEQFDRGC
RGYLEDSKLKSLLSHPPWRSSDRGWWKLNTDASWSNSELRGDLGWVIRDSTESLVGAGCKQIHRKWSIEALEGDAIQEGLKVYLRCSNEEGLRPPLMVELDALGVVNVLL
GESVDLSKSGLIFDEIKQMTKSERVVFSHCCREVNFLAHKVAHAAAAYGDYSVIFGPSPSLVLEGRVLERNESIPCWFSSLFVVNVGS