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Spg037500 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037500
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold11:31271850..31272865
RNA-Seq ExpressionSpg037500
SyntenySpg037500
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]4.9e-3135.02Show/hide
Query:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------------------------------------IVEMMGPACSGFGWNEERKCIEAE
        SK  KH WT  +D +LV+CL+ LV+ GG                                                I EMMGPACSGFGWNEERKCIEAE
Subjt:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------------------------------------IVEMMGPACSGFGWNEERKCIEAE

Query:  K-IFDAWVECLGRTVREGARTPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------T
        K +FD WV    +T R+     IE           E+DM+++ E+  +P+P  ++P  GE+                       + G L          T
Subjt:  K-IFDAWVECLGRTVREGARTPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------T

Query:  SKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP
        SK I KIA W   K E++ +  K LY +LQ+IPG+ +DD L+VA +LL D  ML  F+++P EWKY  CM +LG  P
Subjt:  SKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-2935.77Show/hide
Query:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEKIFDAWVECLGRTVREGARTPIELTPEPKP
        SK  KH WT   D +LV+CL+ LV+ GG                  I EMMGPACS FGWNEERK               GR      +TP+E+  +   
Subjt:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEKIFDAWVECLGRTVREGARTPIELTPEPKP

Query:  VVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------TSKAIEKIALWLTRKDEMKQNRRKELYAELQS
            E+DM+++ E+  +P+P  ++P  GE+                       + G L          TSK I KIA W   K E++ +  K LY ELQ+
Subjt:  VVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------TSKAIEKIALWLTRKDEMKQNRRKELYAELQS

Query:  IPGVSMDDGLVVARALLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP
        IPG+ +DD L+VA +LL D  ML  F+++P EWKY  CM +LG  P
Subjt:  IPGVSMDDGLVVARALLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP

TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-2135.16Show/hide
Query:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEK-IFDAWVECLGRTVREGARTPIELTPEPK
        SK  KH WT   D +LV CL+ LV+ GG                  I EMMGPACSGFGWNEERKCIEAEK +FD WV+  G     G      L  +P 
Subjt:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEK-IFDAWVECLGRTVREGARTPIELTPEPK

Query:  PV-----VHLEEDMNVDYENCYVPSPPVIDPTYGEEFCGTLTSKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFM
        P      V    D         +P+P  ++P  GE+   T TS A +            + ++++  Y+         + D      +LL D  ML  F+
Subjt:  PV-----VHLEEDMNVDYENCYVPSPPVIDPTYGEEFCGTLTSKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFM

Query:  NFPPEWKYNYCMEVLGSAP
        ++P EWKY  CM +LG  P
Subjt:  NFPPEWKYNYCMEVLGSAP

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]5.0e-2835.43Show/hide
Query:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEK-IFDAWVE---------------------
        SK  KH WT   D +LV+CL+ LV+ GG                  I EMMGPACSGFGWNE +KCIE EK +FD WV+                     
Subjt:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEK-IFDAWVE---------------------

Query:  CLGRTVREGAR--TPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------TSKAIEKI
          GR    G R  TP+E++ +       E+DM+++ E+  +P+P  ++P  GE+                       + G L          TSK I KI
Subjt:  CLGRTVREGAR--TPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------TSKAIEKI

Query:  ALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMNFP
        A W   K E++ +  K LYAELQ+IPG+ +DD L+VA +LL D  ML  F+++P
Subjt:  ALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMNFP

TYK10886.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-2035.12Show/hide
Query:  MMGPACSGFGWNEERKCIEAEK-IFDAWVE---------------------CLGRTVREGAR--TPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDP
        MMGPACS FGWNEE+KCIEA+K +FD WV+                       GR    G R  TP+E+  +       E+DM+++ E+  +P+P  ++P
Subjt:  MMGPACSGFGWNEERKCIEAEK-IFDAWVE---------------------CLGRTVREGAR--TPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDP

Query:  TYGEE-------------------------------FCGTL--TSKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTH
          GE+                               FC ++  TSK I KI  W   K E++ +  K LYAELQ+IPG+ +DD L+V  +LL D  ML  
Subjt:  TYGEE-------------------------------FCGTL--TSKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTH

Query:  FMNFP
        F+N+P
Subjt:  FMNFP

TrEMBL top hitse value%identityAlignment
A0A5A7U7F7 Retrotransposon protein2.4e-3135.02Show/hide
Query:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------------------------------------IVEMMGPACSGFGWNEERKCIEAE
        SK  KH WT  +D +LV+CL+ LV+ GG                                                I EMMGPACSGFGWNEERKCIEAE
Subjt:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------------------------------------IVEMMGPACSGFGWNEERKCIEAE

Query:  K-IFDAWVECLGRTVREGARTPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------T
        K +FD WV    +T R+     IE           E+DM+++ E+  +P+P  ++P  GE+                       + G L          T
Subjt:  K-IFDAWVECLGRTVREGARTPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------T

Query:  SKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP
        SK I KIA W   K E++ +  K LY +LQ+IPG+ +DD L+VA +LL D  ML  F+++P EWKY  CM +LG  P
Subjt:  SKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP

A0A5A7VG45 Retrotransposon protein2.2e-2935.77Show/hide
Query:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEKIFDAWVECLGRTVREGARTPIELTPEPKP
        SK  KH WT   D +LV+CL+ LV+ GG                  I EMMGPACS FGWNEERK               GR      +TP+E+  +   
Subjt:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEKIFDAWVECLGRTVREGARTPIELTPEPKP

Query:  VVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------TSKAIEKIALWLTRKDEMKQNRRKELYAELQS
            E+DM+++ E+  +P+P  ++P  GE+                       + G L          TSK I KIA W   K E++ +  K LY ELQ+
Subjt:  VVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------TSKAIEKIALWLTRKDEMKQNRRKELYAELQS

Query:  IPGVSMDDGLVVARALLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP
        IPG+ +DD L+VA +LL D  ML  F+++P EWKY  CM +LG  P
Subjt:  IPGVSMDDGLVVARALLSDLNMLTHFMNFPPEWKYNYCMEVLGSAP

A0A5D3C542 Retrotransposon protein1.7e-2135.16Show/hide
Query:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEK-IFDAWVECLGRTVREGARTPIELTPEPK
        SK  KH WT   D +LV CL+ LV+ GG                  I EMMGPACSGFGWNEERKCIEAEK +FD WV+  G     G      L  +P 
Subjt:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEK-IFDAWVECLGRTVREGARTPIELTPEPK

Query:  PV-----VHLEEDMNVDYENCYVPSPPVIDPTYGEEFCGTLTSKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFM
        P      V    D         +P+P  ++P  GE+   T TS A +            + ++++  Y+         + D      +LL D  ML  F+
Subjt:  PV-----VHLEEDMNVDYENCYVPSPPVIDPTYGEEFCGTLTSKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFM

Query:  NFPPEWKYNYCMEVLGSAP
        ++P EWKY  CM +LG  P
Subjt:  NFPPEWKYNYCMEVLGSAP

A0A5D3C7T4 Uncharacterized protein2.4e-2835.43Show/hide
Query:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEK-IFDAWVE---------------------
        SK  KH WT   D +LV+CL+ LV+ GG                  I EMMGPACSGFGWNE +KCIE EK +FD WV+                     
Subjt:  SKKEKHVWTPEVDTILVQCLVHLVQIGG------------------IVEMMGPACSGFGWNEERKCIEAEK-IFDAWVE---------------------

Query:  CLGRTVREGAR--TPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------TSKAIEKI
          GR    G R  TP+E++ +       E+DM+++ E+  +P+P  ++P  GE+                       + G L          TSK I KI
Subjt:  CLGRTVREGAR--TPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDPTYGEE-----------------------FCGTL----------TSKAIEKI

Query:  ALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMNFP
        A W   K E++ +  K LYAELQ+IPG+ +DD L+VA +LL D  ML  F+++P
Subjt:  ALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMNFP

A0A5D3CKC1 Retrotransposon protein8.4e-2135.12Show/hide
Query:  MMGPACSGFGWNEERKCIEAEK-IFDAWVE---------------------CLGRTVREGAR--TPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDP
        MMGPACS FGWNEE+KCIEA+K +FD WV+                       GR    G R  TP+E+  +       E+DM+++ E+  +P+P  ++P
Subjt:  MMGPACSGFGWNEERKCIEAEK-IFDAWVE---------------------CLGRTVREGAR--TPIELTPEPKPVVHLEEDMNVDYENCYVPSPPVIDP

Query:  TYGEE-------------------------------FCGTL--TSKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTH
          GE+                               FC ++  TSK I KI  W   K E++ +  K LYAELQ+IPG+ +DD L+V  +LL D  ML  
Subjt:  TYGEE-------------------------------FCGTL--TSKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTH

Query:  FMNFP
        F+N+P
Subjt:  FMNFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATGACAGCATTGGGATTAGGATCCAAGAAGGAGAAACATGTCTGGACACCGGAGGTGGACACAATCCTTGTGCAATGCCTAGTCCACTTGGTACAGATAGGAGG
AATTGTTGAGATGATGGGACCAGCTTGTAGTGGGTTTGGGTGGAACGAGGAGAGGAAGTGCATCGAGGCAGAGAAGATCTTTGATGCGTGGGTCGAGTGTTTGGGAAGGA
CAGTGCGAGAGGGAGCTCGCACTCCTATTGAGCTTACACCGGAACCGAAACCGGTAGTCCATCTTGAAGAGGACATGAACGTAGACTACGAAAATTGTTACGTCCCCAGT
CCACCTGTTATTGATCCCACATATGGGGAAGAATTCTGTGGGACACTGACTAGCAAAGCAATTGAAAAGATTGCATTGTGGCTGACGAGGAAGGATGAGATGAAGCAAAA
TCGTCGGAAGGAGTTGTATGCAGAGCTGCAGTCGATACCTGGAGTGTCTATGGACGATGGCCTGGTGGTCGCACGGGCGCTACTGTCTGATTTGAACATGCTCACTCACT
TCATGAACTTCCCTCCAGAATGGAAGTATAACTACTGCATGGAAGTCCTTGGTAGCGCACCCAAACAACCTAGGCAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGATGACAGCATTGGGATTAGGATCCAAGAAGGAGAAACATGTCTGGACACCGGAGGTGGACACAATCCTTGTGCAATGCCTAGTCCACTTGGTACAGATAGGAGG
AATTGTTGAGATGATGGGACCAGCTTGTAGTGGGTTTGGGTGGAACGAGGAGAGGAAGTGCATCGAGGCAGAGAAGATCTTTGATGCGTGGGTCGAGTGTTTGGGAAGGA
CAGTGCGAGAGGGAGCTCGCACTCCTATTGAGCTTACACCGGAACCGAAACCGGTAGTCCATCTTGAAGAGGACATGAACGTAGACTACGAAAATTGTTACGTCCCCAGT
CCACCTGTTATTGATCCCACATATGGGGAAGAATTCTGTGGGACACTGACTAGCAAAGCAATTGAAAAGATTGCATTGTGGCTGACGAGGAAGGATGAGATGAAGCAAAA
TCGTCGGAAGGAGTTGTATGCAGAGCTGCAGTCGATACCTGGAGTGTCTATGGACGATGGCCTGGTGGTCGCACGGGCGCTACTGTCTGATTTGAACATGCTCACTCACT
TCATGAACTTCCCTCCAGAATGGAAGTATAACTACTGCATGGAAGTCCTTGGTAGCGCACCCAAACAACCTAGGCAACCATGA
Protein sequenceShow/hide protein sequence
MQMTALGLGSKKEKHVWTPEVDTILVQCLVHLVQIGGIVEMMGPACSGFGWNEERKCIEAEKIFDAWVECLGRTVREGARTPIELTPEPKPVVHLEEDMNVDYENCYVPS
PPVIDPTYGEEFCGTLTSKAIEKIALWLTRKDEMKQNRRKELYAELQSIPGVSMDDGLVVARALLSDLNMLTHFMNFPPEWKYNYCMEVLGSAPKQPRQP