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Spg037540 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037540
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionZinc finger, PMZ-type
Genome locationscaffold11:31009281..31013559
RNA-Seq ExpressionSpg037540
SyntenySpg037540
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON58068.1 Zinc finger, PMZ-type [Trema orientale]7.9e-2744.7Show/hide
Query:  EAIMSRLGIVDQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGR
        E I   +   + F+V+L  +TCSC  +   E+PCSHA  V ++KHLS+ DY   YY  +++ + Y G VHP+GN   W IP ++  +K+  P  KR AGR
Subjt:  EAIMSRLGIVDQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGR

Query:  PKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCK
        PKK  IPS  E K + +CGRC   GHNR TC+
Subjt:  PKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCK

XP_022155207.1 uncharacterized protein LOC111022347 [Momordica charantia]3.2e-2862.11Show/hide
Query:  RKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCKFAFTQ
        +KHL  K YV +YY+N+ L S YSG +HP+G+++SW IPE++K +K+  PNVKR AGRPKK+ IPS +EFK+RVKC RCGR GHNRK+CKF+ TQ
Subjt:  RKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCKFAFTQ

XP_030483642.1 uncharacterized protein LOC115700217 [Cannabis sativa]8.2e-2444.92Show/hide
Query:  VDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKR
        V+L N+TC+C+ +D  E+PCSHA  VL++++ S   Y   YYT ++  S Y   + P+G   SW IPE++K + + PP  KR AGRPKK      M+ K 
Subjt:  VDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKR

Query:  RVKCGRCGRVGHNRKTCK
        +VKCG+C + GHNR++CK
Subjt:  RVKCGRCGRVGHNRKTCK

XP_030487349.1 uncharacterized protein LOC115704274 [Cannabis sativa]8.2e-2444.92Show/hide
Query:  VDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKR
        V+L N+TC+C+ +D  E+PCSHA  VL++++ S   Y   YYT ++  S Y   + P+G   SW IPE++K + + PP  KR AGRPKK      M+ K 
Subjt:  VDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKR

Query:  RVKCGRCGRVGHNRKTCK
        +VKCG+C + GHNR++CK
Subjt:  RVKCGRCGRVGHNRKTCK

XP_030497480.1 uncharacterized protein LOC115713133 [Cannabis sativa]8.2e-2444.92Show/hide
Query:  VDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKR
        V+L N+TC+C+ +D  E+PCSHA  VL++++ S   Y   YYT ++  S Y   + P+G   SW IPE++K + + PP  KR AGRPKK      M+ K 
Subjt:  VDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKR

Query:  RVKCGRCGRVGHNRKTCK
        +VKCG+C + GHNR++CK
Subjt:  RVKCGRCGRVGHNRKTCK

TrEMBL top hitse value%identityAlignment
A0A2P5CAJ9 Zinc finger, PMZ-type3.8e-2744.7Show/hide
Query:  EAIMSRLGIVDQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGR
        E I   +   + F+V+L  +TCSC  +   E+PCSHA  V ++KHLS+ DY   YY  +++ + Y G VHP+GN   W IP ++  +K+  P  KR AGR
Subjt:  EAIMSRLGIVDQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGR

Query:  PKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCK
        PKK  IPS  E K + +CGRC   GHNR TC+
Subjt:  PKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCK

A0A438D3H5 Uncharacterized protein9.8e-2340.13Show/hide
Query:  EIMMPQGLTFQLLVEAIMSR------LGIVDQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVI
        EI     ++   LVEAI S+      +GI  Q ++D   R+C+CR +D   IPC+HA T     ++S       Y+T  +L S YS  ++P GNE  WV+
Subjt:  EIMMPQGLTFQLLVEAIMSR------LGIVDQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVI

Query:  PENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCK
        P +++   + PP ++R  GRP+KV +PS  E KR  +C +CG+ GHNRKTCK
Subjt:  PENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCK

A0A438KCS7 Uncharacterized protein1.7e-2240.13Show/hide
Query:  EIMMPQGLTFQLLVEAIMSR------LGIVDQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVI
        E+     ++   LVE I S+       GI  Q ++D   R+C+CR +D   IPC+HA       ++S       Y+T  +L S YS  ++PIGNE  WV+
Subjt:  EIMMPQGLTFQLLVEAIMSR------LGIVDQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVI

Query:  PENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCK
        P +++   + PP  +R  GRP+KV IPS  E KR  +C RCG+ GHNRKTCK
Subjt:  PENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCK

A0A6J1DNQ8 uncharacterized protein LOC1110223471.6e-2862.11Show/hide
Query:  RKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCKFAFTQ
        +KHL  K YV +YY+N+ L S YSG +HP+G+++SW IPE++K +K+  PNVKR AGRPKK+ IPS +EFK+RVKC RCGR GHNRK+CKF+ TQ
Subjt:  RKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCKFAFTQ

W9R1I1 Uncharacterized protein2.6e-2343.7Show/hide
Query:  VDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEF-K
        V++  +TC+C   +  ++PCSH+    ++ ++    Y   YYTN++L++ Y   VHP+G+ ++W +P+N+K +KIF P+ K   GRP+   IPS  E  K
Subjt:  VDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEF-K

Query:  RRVKCGRCGRVGHNRKTCK
         +VKCGRCGR GHNRKTCK
Subjt:  RRVKCGRCGRVGHNRKTCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase2.8e-0628.92Show/hide
Query:  DQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPN
        +++ V L   TC+CR +   + PC HA  V  +  ++   YV   YT +     Y+    P+ + A+W  PE+ +   +FPP+
Subjt:  DQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTNDSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTGTGGGTTCGTGTGGGTTTCAACAAGGAAGATGATTGTCGGCGTTCGCGTCGTCTTCAGCTTCATGGTTCGTGTGGGTTTCGTCGGTTTCAGAGTTCATCTTC
ACGATTCGTGTGGGTTTCGGAGTTCATCTTCGTGTGGGTTTCGTCTTCATCTTCGTGGGTTTCGTGCGGTTCATCTACGTTGGTCTGTTGGTGTGGGTTTCGTGGGTTTC
CAACATCATCATCTTCGCTCCTCATCGCTCGCCCAGATCCGTTCGGAAGTATTGCAGTCGCAGTGGCCGACCAGATCTCTTCATCGCATCGCTCGCCCAAATCTCGTGAC
TTTCGCTTGCCGTCGTCGCCCGCTCTCCTCCCAGGTTCAAACTTAATTCCCGTCTGCATGCTTCATGGGGGTAAATGGGACGGTAGTGACAACAACGTTGAATTCCAAGT
TTCGGAGATAATGATGCCTCAAGGATTGACGTTTCAATTGTTGGTTGAGGCTATAATGTCCCGGCTAGGAATAGTAGATCAGTTCGACGTTGACCTCATCAACCGGACTT
GTTCTTGTCGAATTTGGGACCAACTAGAAATTCCATGTTCACATGCTTGCACGGTATTGTCTCGAAAGCATCTATCGACAAAGGATTATGTATTGGCCTATTATACTAAT
GATTCACTACGATCAATATATAGTGGAATTGTTCATCCAATTGGCAATGAAGCTTCTTGGGTTATTCCAGAAAATTTGAAGACCGTGAAAATATTCCCTCCAAATGTCAA
GCGTGCAGCTGGAAGGCCGAAGAAAGTAACGATCCCATCAACAATGGAATTTAAGAGGAGAGTTAAATGTGGTCGTTGCGGACGCGTTGGTCACAACAGGAAGACATGCA
AATTCGCCTTTACCCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGGTGTGGGTTCGTGTGGGTTTCAACAAGGAAGATGATTGTCGGCGTTCGCGTCGTCTTCAGCTTCATGGTTCGTGTGGGTTTCGTCGGTTTCAGAGTTCATCTTC
ACGATTCGTGTGGGTTTCGGAGTTCATCTTCGTGTGGGTTTCGTCTTCATCTTCGTGGGTTTCGTGCGGTTCATCTACGTTGGTCTGTTGGTGTGGGTTTCGTGGGTTTC
CAACATCATCATCTTCGCTCCTCATCGCTCGCCCAGATCCGTTCGGAAGTATTGCAGTCGCAGTGGCCGACCAGATCTCTTCATCGCATCGCTCGCCCAAATCTCGTGAC
TTTCGCTTGCCGTCGTCGCCCGCTCTCCTCCCAGGTTCAAACTTAATTCCCGTCTGCATGCTTCATGGGGGTAAATGGGACGGTAGTGACAACAACGTTGAATTCCAAGT
TTCGGAGATAATGATGCCTCAAGGATTGACGTTTCAATTGTTGGTTGAGGCTATAATGTCCCGGCTAGGAATAGTAGATCAGTTCGACGTTGACCTCATCAACCGGACTT
GTTCTTGTCGAATTTGGGACCAACTAGAAATTCCATGTTCACATGCTTGCACGGTATTGTCTCGAAAGCATCTATCGACAAAGGATTATGTATTGGCCTATTATACTAAT
GATTCACTACGATCAATATATAGTGGAATTGTTCATCCAATTGGCAATGAAGCTTCTTGGGTTATTCCAGAAAATTTGAAGACCGTGAAAATATTCCCTCCAAATGTCAA
GCGTGCAGCTGGAAGGCCGAAGAAAGTAACGATCCCATCAACAATGGAATTTAAGAGGAGAGTTAAATGTGGTCGTTGCGGACGCGTTGGTCACAACAGGAAGACATGCA
AATTCGCCTTTACCCAATAG
Protein sequenceShow/hide protein sequence
MMVWVRVGFNKEDDCRRSRRLQLHGSCGFRRFQSSSSRFVWVSEFIFVWVSSSSSWVSCGSSTLVCWCGFRGFPTSSSSLLIARPDPFGSIAVAVADQISSSHRSPKSRD
FRLPSSPALLPGSNLIPVCMLHGGKWDGSDNNVEFQVSEIMMPQGLTFQLLVEAIMSRLGIVDQFDVDLINRTCSCRIWDQLEIPCSHACTVLSRKHLSTKDYVLAYYTN
DSLRSIYSGIVHPIGNEASWVIPENLKTVKIFPPNVKRAAGRPKKVTIPSTMEFKRRVKCGRCGRVGHNRKTCKFAFTQ