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Spg037561 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037561
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold11:33350567..33352808
RNA-Seq ExpressionSpg037561
SyntenySpg037561
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025858.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-2356.47Show/hide
Query:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
        C + +T+ IDY+++ LKR ++ +A+M G  CSGFGWN + KC+  EKE+FD WV+SH AAKGLLNK FP+Y+EL +VF +DRA+G
Subjt:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
KAA0047069.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-2364.56Show/hide
Query:  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
        STI+ ++++LKR +  +A+MLG  CSG GWN + KC+  EKEVFD WVKSHLAAKGLLNK FPHY+EL++VF KDRA+G
Subjt:  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-2358.82Show/hide
Query:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
        C+    STID ++++LKR +  + +M G  CSGFGWN + KC+  EKEVFD WV+SH AAKGLLNKSFPHY+EL++VF+KD A+G
Subjt:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
TYK05687.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-2364.56Show/hide
Query:  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
        STID ++++LKR +  +A+M G  CSGFGWN + KC+ VEKEVFD WVKSH  AKGLLNKSFPHY+EL+++F KDRA G
Subjt:  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]2.3e-2357.65Show/hide
Query:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
        C + +T+ IDY+++ LKR Y+ +A+M G  CSGFGWN   KC+  EKE FD WV+SH AAKGLLNK FP+Y++ A+VF KDRA G
Subjt:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
TrEMBL top hitse value%identityAlignment
A0A5A7SI64 Retrotransposon protein8.4e-2456.47Show/hide
Query:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
        C + +T+ IDY+++ LKR ++ +A+M G  CSGFGWN + KC+  EKE+FD WV+SH AAKGLLNK FP+Y+EL +VF +DRA+G
Subjt:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
A0A5A7TZA5 Retrotransposon protein1.4e-2358.82Show/hide
Query:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
        C+    STID ++++LKR +  + +M G  CSGFGWN + KC+  EKEVFD WV+SH AAKGLLNKSFPHY+EL++VF+KD A+G
Subjt:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
A0A5A7U0R2 Retrotransposon protein1.1e-2364.56Show/hide
Query:  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
        STI+ ++++LKR +  +A+MLG  CSG GWN + KC+  EKEVFD WVKSHLAAKGLLNK FPHY+EL++VF KDRA+G
Subjt:  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
A0A5A7V6Q9 Retrotransposon protein1.9e-2356.47Show/hide
Query:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
        C + +T+ ID +++ LKR ++ +A+M G  CSGFGWN + KC+  EKE+FD WV+SH AAKGLLNKSFP+Y+EL +VF +DRA+G
Subjt:  CTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
A0A5D3C1J4 Retrotransposon protein6.4e-2464.56Show/hide
Query:  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
        STID ++++LKR +  +A+M G  CSGFGWN + KC+ VEKEVFD WVKSH  AKGLLNKSFPHY+EL+++F KDRA G
Subjt:  STIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELAFVFAKDRASG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02210.1 unknown protein1.1e-0425Show/hide
Query:  ESSNEWRCTIESTSTIDY---KVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEEL
        E  N +    ES   +D    + + L+RQ+  +  +L  R  GF W+ + + V  +  V+  ++K+H  A+  + +  P+Y++L
Subjt:  ESSNEWRCTIESTSTIDY---KVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEEL
AT4G02210.2 unknown protein1.1e-0425Show/hide
Query:  ESSNEWRCTIESTSTIDY---KVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEEL
        E  N +    ES   +D    + + L+RQ+  +  +L  R  GF W+ + + V  +  V+  ++K+H  A+  + +  P+Y++L
Subjt:  ESSNEWRCTIESTSTIDY---KVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEEL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCCAGACGTTGGCTCAGAAGAAGTGAATATTGGGAGGTCCGATCCAATGGCGCTTGATGAGGATAATATAACTTTCATTGAAAGCTCAAACGAATGGAGGTGCAC
TATTGAGTCCACGTCAACAATAGACTACAAAGTAAGAGTTCTGAAACGGCAGTATGAAACAGTCGCCAAGATGTTGGGTTCGAGGTGCAGTGGTTTCGGGTGGAATACGA
AGTATAAATGTGTCGAAGTTGAGAAGGAAGTGTTTGACGCGTGGGTCAAGTCTCATTTAGCTGCGAAAGGACTCCTGAACAAGTCATTCCCTCACTACGAGGAATTAGCC
TTTGTGTTCGCTAAAGATCGAGCTAGCGGGGTTGGGTTGTACCGTACCGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCCAGACGTTGGCTCAGAAGAAGTGAATATTGGGAGGTCCGATCCAATGGCGCTTGATGAGGATAATATAACTTTCATTGAAAGCTCAAACGAATGGAGGTGCAC
TATTGAGTCCACGTCAACAATAGACTACAAAGTAAGAGTTCTGAAACGGCAGTATGAAACAGTCGCCAAGATGTTGGGTTCGAGGTGCAGTGGTTTCGGGTGGAATACGA
AGTATAAATGTGTCGAAGTTGAGAAGGAAGTGTTTGACGCGTGGGTCAAGTCTCATTTAGCTGCGAAAGGACTCCTGAACAAGTCATTCCCTCACTACGAGGAATTAGCC
TTTGTGTTCGCTAAAGATCGAGCTAGCGGGGTTGGGTTGTACCGTACCGACTGA
Protein sequenceShow/hide protein sequence
MGPDVGSEEVNIGRSDPMALDEDNITFIESSNEWRCTIESTSTIDYKVRVLKRQYETVAKMLGSRCSGFGWNTKYKCVEVEKEVFDAWVKSHLAAKGLLNKSFPHYEELA
FVFAKDRASGVGLYRTD