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Spg037611 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037611
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold2:51045236..51047258
RNA-Seq ExpressionSpg037611
SyntenySpg037611
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]1.3e-2459.32Show/hide
Query:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES
        +YK NQKLYLV C VFENEEF VYFINFG VLRKL               PRGNR SLQTGELDKT                 VEIELP P+ LPTSAES
Subjt:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES

Query:  SRTSSSTWVELYIESVHI
        SR++SSTW+ELY E VH+
Subjt:  SRTSSSTWVELYIESVHI

KAA0062674.1 uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa]4.0e-2357.63Show/hide
Query:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES
        V++SNQ LYLV CRVF +E+F VYFINFG VLRKL               PRGNR SLQTG+LDKT                 VEIELPVPDT PTS ES
Subjt:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES

Query:  SRTSSSTWVELYIESVHI
        S ++SSTW+ELYIESVH+
Subjt:  SRTSSSTWVELYIESVHI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]5.3e-1569.35Show/hide
Query:  INFGSVLRKLGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        I + +    + PRGNR S QTG+LDKTVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  INFGSVLRKLGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]1.5e-1756.07Show/hide
Query:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES
        V++SNQ LYLV CRVF +E+F VYFINFG VLRKL               PRGNRSSLQTG+LDKT                 VEIELPVPDT PTSAES
Subjt:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES

Query:  SRTSSST
        S ++SS+
Subjt:  SRTSSST

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]8.1e-1652.14Show/hide
Query:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLGP--------------RGNRSSLQTGELDKT----------------------------------
        V+KSNQKLYLV CRVFENE F VYFINFG VLRKL                RGNR SLQTGELDKT                                  
Subjt:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLGP--------------RGNRSSLQTGELDKT----------------------------------

Query:  VEIELPVPDTLPTSAES
        VEIELPVPDTLPTSAES
Subjt:  VEIELPVPDTLPTSAES

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein2.6e-1571.43Show/hide
Query:  FINFGSVLRKLGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        F+ F   L  L PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+
Subjt:  FINFGSVLRKLGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5A7UFD2 Uncharacterized protein6.1e-2559.32Show/hide
Query:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES
        +YK NQKLYLV C VFENEEF VYFINFG VLRKL               PRGNR SLQTGELDKT                 VEIELP P+ LPTSAES
Subjt:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES

Query:  SRTSSSTWVELYIESVHI
        SR++SSTW+ELY E VH+
Subjt:  SRTSSSTWVELYIESVHI

A0A5A7V5Z6 Uncharacterized protein2.0e-2357.63Show/hide
Query:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES
        V++SNQ LYLV CRVF +E+F VYFINFG VLRKL               PRGNR SLQTG+LDKT                 VEIELPVPDT PTS ES
Subjt:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES

Query:  SRTSSSTWVELYIESVHI
        S ++SSTW+ELYIESVH+
Subjt:  SRTSSSTWVELYIESVHI

A0A5D3BQ75 Uncharacterized protein7.2e-1856.07Show/hide
Query:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES
        V++SNQ LYLV CRVF +E+F VYFINFG VLRKL               PRGNRSSLQTG+LDKT                 VEIELPVPDT PTSAES
Subjt:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLG--------------PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES

Query:  SRTSSST
        S ++SS+
Subjt:  SRTSSST

A0A5D3CSJ5 Putative polyprotein3.9e-1652.14Show/hide
Query:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLGP--------------RGNRSSLQTGELDKT----------------------------------
        V+KSNQKLYLV CRVFENE F VYFINFG VLRKL                RGNR SLQTGELDKT                                  
Subjt:  VYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLGP--------------RGNRSSLQTGELDKT----------------------------------

Query:  VEIELPVPDTLPTSAES
        VEIELPVPDTLPTSAES
Subjt:  VEIELPVPDTLPTSAES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGTACGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGT
GTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTAGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGC
CTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATCGAGTCTGTTCATATTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGTACGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGT
GTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTAGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGC
CTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATCGAGTCTGTTCATATTGGTTAA
Protein sequenceShow/hide protein sequence
MRISGVLWCFEHSGVYKSNQKLYLVRCRVFENEEFDVYFINFGSVLRKLGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIG