; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037614 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037614
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:50558262..50561327
RNA-Seq ExpressionSpg037614
SyntenySpg037614
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]4.8e-8171.55Show/hide
Query:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSAD----VEVW------
        VMPPR+SR  +QN+D TQDPTQGQSERGSST R Q    SE+FARSA+E+GRPE+A PSDPEKMY IE+LKK EATVFEGSTD AD     E W      
Subjt:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSAD----VEVW------

Query:  -RSDARTLDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIA
         R+DARTLDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQ  LS+ EYERKYTELSRYA +I+ASESDRC RFERGLRFEIRTPVT IAKWT FS+ VE A
Subjt:  -RSDARTLDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIA

Query:  LCVEQSIIEEKSVVEPSRGASTASGFQDPGATHSFVSGM
        L VEQSI+EEKS +E SRG ST SG + P     F SG+
Subjt:  LCVEQSIIEEKSVVEPSRGASTASGFQDPGATHSFVSGM

KAA0044257.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]5.9e-7966.27Show/hide
Query:  MPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVW-----------
        MPPRT R  +QNQDG Q PTQG S R SST  V+ G G+EQFAR+ +E+GRP+RAEPSDPEK YEIE+LKK  ATVFEGSTD AD E W           
Subjt:  MPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVW-----------

Query:  -----------------------------RSDARTLDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRF
                                     RSDAR LDWQTFRGIFEDKYYPSTYCEAKRDEF+GLKQ  LSV EYERKYTELSRYADVIVASES+RC+RF
Subjt:  -----------------------------RSDARTLDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRF

Query:  ERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEKSVVEPSRGASTASGFQ
        ERGLRFEIRTPVT IAKWT FS+ VE AL VEQSI +EKS VE SRG STASGF+
Subjt:  ERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEKSVVEPSRGASTASGFQ

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-7975.59Show/hide
Query:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQ
        VMPPRTSR  +QNQD  QDPTQGQSERGSST R Q   GSE+F RSA+E+GR ERA PSDPEKMY IE+LK+  ATVF GSTD AD EVW +DARTLDWQ
Subjt:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQ

Query:  TFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEK
        TFRGIFE+KYYP+T CEAKRDEFL LKQ  LSV +Y+RKYTELS YA+VI+ASESDRCRRFERGL FEIRTPVT IAKWT FS+ +E AL VEQSI+EEK
Subjt:  TFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEK

Query:  SVVEPSRGASTAS
        S +E SRG ST S
Subjt:  SVVEPSRGASTAS

KAA0056353.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-7966.8Show/hide
Query:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQ
        VMPPRTS+  +QNQDGTQDPTQGQSERGSST R Q   GSE+F+RSA+E+GRPE+A PSDPEKMY IE+LKK EATVF+GSTD AD EVWR+DARTLDWQ
Subjt:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQ

Query:  TFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEK
        TFRGIFE+KYYP+TYCEAKRDEFL LKQ  LSVVEYERK      YA++IVA ESDRC R ERGLRFE RTPVT I KW  FS+ VE AL VEQSI+EEK
Subjt:  TFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEK

Query:  SVVEPSRGASTASGFQ-------DPGATHSFVSGMFLAKLNKMLEPLSGGALW
        SV+E SRG ST SG +        PG   S           K L  +S G+ +
Subjt:  SVVEPSRGASTASGFQ-------DPGATHSFVSGMFLAKLNKMLEPLSGGALW

TYK29162.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.7e-7966.67Show/hide
Query:  MPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQT
        MPPRTS+  +QNQDGTQDPTQGQSERGSST R Q   GSE+F+RSA+E+GRPE+A PSDPEKMY IE+LKK EATVF+GSTD AD EVWR+DARTLDWQT
Subjt:  MPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQT

Query:  FRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEKS
        FRGIFE+KYYP+TYCEAKRDEFL LKQ  LSVVEYERK      YA++IVA ESDRC R ERGLRFE RTPVT I KW  FS+ VE AL VEQSI+EEKS
Subjt:  FRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEKS

Query:  VVEPSRGASTASGFQ-------DPGATHSFVSGMFLAKLNKMLEPLSGGALW
        V+E SRG ST SG +        PG   S           K L  +S G+ +
Subjt:  VVEPSRGASTASGFQ-------DPGATHSFVSGMFLAKLNKMLEPLSGGALW

TrEMBL top hitse value%identityAlignment
A0A5A7TQW1 Gag protease polyprotein-like protein2.9e-7966.27Show/hide
Query:  MPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVW-----------
        MPPRT R  +QNQDG Q PTQG S R SST  V+ G G+EQFAR+ +E+GRP+RAEPSDPEK YEIE+LKK  ATVFEGSTD AD E W           
Subjt:  MPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVW-----------

Query:  -----------------------------RSDARTLDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRF
                                     RSDAR LDWQTFRGIFEDKYYPSTYCEAKRDEF+GLKQ  LSV EYERKYTELSRYADVIVASES+RC+RF
Subjt:  -----------------------------RSDARTLDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRF

Query:  ERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEKSVVEPSRGASTASGFQ
        ERGLRFEIRTPVT IAKWT FS+ VE AL VEQSI +EKS VE SRG STASGF+
Subjt:  ERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEKSVVEPSRGASTASGFQ

A0A5A7U9X4 DNA/RNA polymerases superfamily protein7.5e-8075.59Show/hide
Query:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQ
        VMPPRTSR  +QNQD  QDPTQGQSERGSST R Q   GSE+F RSA+E+GR ERA PSDPEKMY IE+LK+  ATVF GSTD AD EVW +DARTLDWQ
Subjt:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQ

Query:  TFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEK
        TFRGIFE+KYYP+T CEAKRDEFL LKQ  LSV +Y+RKYTELS YA+VI+ASESDRCRRFERGL FEIRTPVT IAKWT FS+ +E AL VEQSI+EEK
Subjt:  TFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEK

Query:  SVVEPSRGASTAS
        S +E SRG ST S
Subjt:  SVVEPSRGASTAS

A0A5A7UKD3 DNA/RNA polymerases superfamily protein1.3e-7966.8Show/hide
Query:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQ
        VMPPRTS+  +QNQDGTQDPTQGQSERGSST R Q   GSE+F+RSA+E+GRPE+A PSDPEKMY IE+LKK EATVF+GSTD AD EVWR+DARTLDWQ
Subjt:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQ

Query:  TFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEK
        TFRGIFE+KYYP+TYCEAKRDEFL LKQ  LSVVEYERK      YA++IVA ESDRC R ERGLRFE RTPVT I KW  FS+ VE AL VEQSI+EEK
Subjt:  TFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEK

Query:  SVVEPSRGASTASGFQ-------DPGATHSFVSGMFLAKLNKMLEPLSGGALW
        SV+E SRG ST SG +        PG   S           K L  +S G+ +
Subjt:  SVVEPSRGASTASGFQ-------DPGATHSFVSGMFLAKLNKMLEPLSGGALW

A0A5D3BSA6 Retrotrans_gag domain-containing protein2.3e-8171.55Show/hide
Query:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSAD----VEVW------
        VMPPR+SR  +QN+D TQDPTQGQSERGSST R Q    SE+FARSA+E+GRPE+A PSDPEKMY IE+LKK EATVFEGSTD AD     E W      
Subjt:  VMPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSAD----VEVW------

Query:  -RSDARTLDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIA
         R+DARTLDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQ  LS+ EYERKYTELSRYA +I+ASESDRC RFERGLRFEIRTPVT IAKWT FS+ VE A
Subjt:  -RSDARTLDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIA

Query:  LCVEQSIIEEKSVVEPSRGASTASGFQDPGATHSFVSGM
        L VEQSI+EEKS +E SRG ST SG + P     F SG+
Subjt:  LCVEQSIIEEKSVVEPSRGASTASGFQDPGATHSFVSGM

A0A5D3DZW6 DNA/RNA polymerases superfamily protein3.7e-7966.67Show/hide
Query:  MPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQT
        MPPRTS+  +QNQDGTQDPTQGQSERGSST R Q   GSE+F+RSA+E+GRPE+A PSDPEKMY IE+LKK EATVF+GSTD AD EVWR+DARTLDWQT
Subjt:  MPPRTSRLPKQNQDGTQDPTQGQSERGSSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQT

Query:  FRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEKS
        FRGIFE+KYYP+TYCEAKRDEFL LKQ  LSVVEYERK      YA++IVA ESDRC R ERGLRFE RTPVT I KW  FS+ VE AL VEQSI+EEKS
Subjt:  FRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEKS

Query:  VVEPSRGASTASGFQ-------DPGATHSFVSGMFLAKLNKMLEPLSGGALW
        V+E SRG ST SG +        PG   S           K L  +S G+ +
Subjt:  VVEPSRGASTASGFQ-------DPGATHSFVSGMFLAKLNKMLEPLSGGALW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAGAAAACACGAAAATGGAATAGCTGTGTTCGGGGGATTTCTAGACAAATCTATTGGGAATCTCAT
TTTCATTCCTTCAAGCCAAGAGGAAATAGGTTATATTTTGTTGTTGACGTTGAGTGTACTCCGTGACAACAATGCTCTCGTGAGTGCTGGGCAGGTTTATTTTCCAAAGT
TCAAGGGTTCAGTAGAGTCATCAGAAGTCATGCCACCACGTACTAGCAGACTACCCAAGCAGAATCAGGACGGGACGCAGGATCCTACCCAGGGTCAATCGGAAAGGGGA
TCCAGTACCTCGAGAGTTCAGACTGGGGTAGGAAGCGAGCAGTTTGCTAGATCTGCAAAGGAGGTAGGCAGGCCAGAGAGAGCAGAGCCTAGTGATCCGGAAAAGATGTA
CGAAATAGAACAACTGAAGAAATCAGAAGCCACAGTGTTTGAGGGTTCCACAGATTCGGCTGACGTCGAGGTTTGGCGCAGTGATGCACGTACCTTAGACTGGCAGACTT
TCAGAGGCATATTCGAAGACAAGTATTATCCTAGCACATACTGTGAGGCAAAGAGGGATGAGTTTCTGGGGTTGAAGCAAAGGTTACTTTCAGTGGTCGAGTACGAGAGA
AAGTATACCGAGCTTTCACGGTATGCTGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCGAAGGTTTGAAAGAGGGCTGCGTTTTGAGATACGTACCCCGGTTACAAC
TATTGCTAAGTGGACAGGTTTTTCTCGGTCAGTAGAGATTGCCCTATGTGTGGAGCAGAGTATAATAGAGGAGAAGTCAGTAGTGGAGCCTAGTCGTGGGGCTTCAACAG
CTAGCGGTTTCCAAGATCCAGGTGCTACACATTCCTTTGTTTCTGGTATGTTTCTAGCTAAGCTGAATAAGATGCTAGAACCTTTATCTGGGGGTGCTCTCTGGCTCGTC
TGCGGTCTTGTTGCTGAACTAGCAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAGAAAACACGAAAATGGAATAGCTGTGTTCGGGGGATTTCTAGACAAATCTATTGGGAATCTCAT
TTTCATTCCTTCAAGCCAAGAGGAAATAGGTTATATTTTGTTGTTGACGTTGAGTGTACTCCGTGACAACAATGCTCTCGTGAGTGCTGGGCAGGTTTATTTTCCAAAGT
TCAAGGGTTCAGTAGAGTCATCAGAAGTCATGCCACCACGTACTAGCAGACTACCCAAGCAGAATCAGGACGGGACGCAGGATCCTACCCAGGGTCAATCGGAAAGGGGA
TCCAGTACCTCGAGAGTTCAGACTGGGGTAGGAAGCGAGCAGTTTGCTAGATCTGCAAAGGAGGTAGGCAGGCCAGAGAGAGCAGAGCCTAGTGATCCGGAAAAGATGTA
CGAAATAGAACAACTGAAGAAATCAGAAGCCACAGTGTTTGAGGGTTCCACAGATTCGGCTGACGTCGAGGTTTGGCGCAGTGATGCACGTACCTTAGACTGGCAGACTT
TCAGAGGCATATTCGAAGACAAGTATTATCCTAGCACATACTGTGAGGCAAAGAGGGATGAGTTTCTGGGGTTGAAGCAAAGGTTACTTTCAGTGGTCGAGTACGAGAGA
AAGTATACCGAGCTTTCACGGTATGCTGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCGAAGGTTTGAAAGAGGGCTGCGTTTTGAGATACGTACCCCGGTTACAAC
TATTGCTAAGTGGACAGGTTTTTCTCGGTCAGTAGAGATTGCCCTATGTGTGGAGCAGAGTATAATAGAGGAGAAGTCAGTAGTGGAGCCTAGTCGTGGGGCTTCAACAG
CTAGCGGTTTCCAAGATCCAGGTGCTACACATTCCTTTGTTTCTGGTATGTTTCTAGCTAAGCTGAATAAGATGCTAGAACCTTTATCTGGGGGTGCTCTCTGGCTCGTC
TGCGGTCTTGTTGCTGAACTAGCAGACTGA
Protein sequenceShow/hide protein sequence
MIGSRFNFRRKVEGSRKHENGIAVFGGFLDKSIGNLIFIPSSQEEIGYILLLTLSVLRDNNALVSAGQVYFPKFKGSVESSEVMPPRTSRLPKQNQDGTQDPTQGQSERG
SSTSRVQTGVGSEQFARSAKEVGRPERAEPSDPEKMYEIEQLKKSEATVFEGSTDSADVEVWRSDARTLDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQRLLSVVEYER
KYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTTIAKWTGFSRSVEIALCVEQSIIEEKSVVEPSRGASTASGFQDPGATHSFVSGMFLAKLNKMLEPLSGGALWLV
CGLVAELAD