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Spg037626 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037626
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold2:50419535..50425434
RNA-Seq ExpressionSpg037626
SyntenySpg037626
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.6e-2671.15Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGP
        L TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS                YF NQVMSGLH V    FNVSVGST I+RGD+VCWLHAVF AK AGGP
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGP

Query:  GGGV
        GGGV
Subjt:  GGGV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-2769.81Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGG
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGI+RGDDVCWLHAVFRAK  GG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGG

Query:  PGGGVS
        PGGGV+
Subjt:  PGGGVS

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.5e-2977.66Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGVSLVHE
        PL T SVL DNDAVVEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGI+RGDDVC LH VFRAK AGGPGGGV++V +
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGVSLVHE

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]4.5e-2981.82Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGV
        L TLSVLRDNDAVVEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    FN+SV STGI+RGDDVCWLHAVFRAK  GGP GGV
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.2e-2769.81Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGG
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGI+RGDDVCWLHAVFRAK  GG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGG

Query:  PGGGVS
        PGGGV+
Subjt:  PGGGVS

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.7e-2671.15Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGP
        L TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS                YF NQVMSGLH V    FNVSVGST I+RGD+VCWLHAVF AK AGGP
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGP

Query:  GGGV
        GGGV
Subjt:  GGGV

A0A5A7V9N3 Reverse transcriptase2.1e-2769.81Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGG
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGI+RGDDVCWLHAVFRAK  GG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGG

Query:  PGGGVS
        PGGGV+
Subjt:  PGGGVS

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein2.2e-2977.66Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGVSLVHE
        PL T SVL DNDAVVEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGI+RGDDVC LH VFRAK AGGPGGGV++V +
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGVSLVHE

A0A5D3BMJ4 Retrotrans_gag domain-containing protein2.2e-2981.82Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGV
        L TLSVLRDNDAVVEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    FN+SV STGI+RGDDVCWLHAVFRAK  GGP GGV
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGV

A0A5D3DSY7 Putative Retrotransposon protein2.1e-2769.81Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGG
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGI+RGDDVCWLHAVFRAK  GG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGG

Query:  PGGGVS
        PGGGV+
Subjt:  PGGGVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACACTTCTCAGCTAATTCTAATTCCGGAATAACTCATATTCCTATAGGCATTAGCCACCGTTATTTGGTCAAGGATTTGTTAACAACACTTAACTCATCCTCGAG
TTCACGGTGTTACGAATCCTATGATCAGGCCCTCCGAAGGGATGGTTCCGGGTTTGTTCCCAGGTCAGTTCCCAGACCCTCAGCTGCACTCTTCTCACTGCAGAATATTT
CTGTGTCCACGGATATCGACCAATACTACAAGTCAGTCCTTCACGTGTGTTCGTATCCCAACTGGGTCAAATTACCGTTTTACCCCTGGTTTACATCTTTGTCCTTAAGT
TATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAATGTTTCAGTAGGGTCAACAGGGATCATTAGAGGTGACGATGTCTGTT
GGCTTCACGCTGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGAGTTTGGTGCATGAGCGATCCGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACACTTCTCAGCTAATTCTAATTCCGGAATAACTCATATTCCTATAGGCATTAGCCACCGTTATTTGGTCAAGGATTTGTTAACAACACTTAACTCATCCTCGAG
TTCACGGTGTTACGAATCCTATGATCAGGCCCTCCGAAGGGATGGTTCCGGGTTTGTTCCCAGGTCAGTTCCCAGACCCTCAGCTGCACTCTTCTCACTGCAGAATATTT
CTGTGTCCACGGATATCGACCAATACTACAAGTCAGTCCTTCACGTGTGTTCGTATCCCAACTGGGTCAAATTACCGTTTTACCCCTGGTTTACATCTTTGTCCTTAAGT
TATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAATGTTTCAGTAGGGTCAACAGGGATCATTAGAGGTGACGATGTCTGTT
GGCTTCACGCTGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGAGTTTGGTGCATGAGCGATCCGCCTAG
Protein sequenceShow/hide protein sequence
MRHFSANSNSGITHIPIGISHRYLVKDLLTTLNSSSSSRCYESYDQALRRDGSGFVPRSVPRPSAALFSLQNISVSTDIDQYYKSVLHVCSYPNWVKLPFYPWFTSLSLS
YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIIRGDDVCWLHAVFRAKLAGGPGGGVSLVHERSA