; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037636 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037636
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionFlap endonuclease 1
Genome locationscaffold2:50636808..50638246
RNA-Seq ExpressionSpg037636
SyntenySpg037636
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0043137 - DNA replication, removal of RNA primer (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0005739 - mitochondrion (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR006084 - XPG/Rad2 endonuclease
IPR006086 - XPG-I domain
IPR019974 - XPG conserved site
IPR029060 - PIN-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4907250.1 hypothetical protein JHK86_055734 [Glycine max]4.3e-4988.03Show/hide
Query:  IVVGRSGTEMLTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQ
        IVVGRSGTEMLTNEAGEVT YVFDGKPPDLKKQELAKRYSKRA+ATEDL++A+E  NKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPV+EAPSEAEAQ
Subjt:  IVVGRSGTEMLTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQ

Query:  CAALCKLGKASTPLCMI
        CAALCK GKAS+ L  +
Subjt:  CAALCKLGKASTPLCMI

KGN66474.2 hypothetical protein Csa_007122 [Cucumis sativus]3.6e-4883.72Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGRSGTEMLTNEAGEVTS                    YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNK+DIEKFSKRTVKVTKQHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPVIEAPSEAEAQCAALCKLGK
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK

PIA40762.1 hypothetical protein AQUCO_02400079v1 [Aquilegia coerulea]3.6e-4893.58Show/hide
Query:  IVVGRSGTEMLTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQ
        IVVGRSGTEMLTNEAGEVT YVFDGKPPDLKKQELAKRYSKRADATEDLA AIE G+KEDIEKFSKRTVKVTKQHNDDCK+LLRLMGVPVIEAPSEAEA+
Subjt:  IVVGRSGTEMLTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQ

Query:  CAALCKLGK
        CAALCK GK
Subjt:  CAALCKLGK

TYK10325.1 flap endonuclease 1 isoform X2 [Cucumis melo var. makuwa]1.6e-4884.5Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGRSGTEMLTNEAGEVTS                    YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPVIEAPSEAEAQCAALCKLGK
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK

XP_008450492.1 PREDICTED: flap endonuclease 1 isoform X2 [Cucumis melo]1.6e-4884.5Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGRSGTEMLTNEAGEVTS                    YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPVIEAPSEAEAQCAALCKLGK
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK

TrEMBL top hitse value%identityAlignment
A0A0A0LWA2 Flap endonuclease 11.8e-4883.72Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGRSGTEMLTNEAGEVTS                    YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNK+DIEKFSKRTVKVTKQHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPVIEAPSEAEAQCAALCKLGK
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK

A0A1S3BQ01 Flap endonuclease 17.9e-4984.5Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGRSGTEMLTNEAGEVTS                    YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPVIEAPSEAEAQCAALCKLGK
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK

A0A2G5DB90 Flap endonuclease 11.8e-4893.58Show/hide
Query:  IVVGRSGTEMLTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQ
        IVVGRSGTEMLTNEAGEVT YVFDGKPPDLKKQELAKRYSKRADATEDLA AIE G+KEDIEKFSKRTVKVTKQHNDDCK+LLRLMGVPVIEAPSEAEA+
Subjt:  IVVGRSGTEMLTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQ

Query:  CAALCKLGK
        CAALCK GK
Subjt:  CAALCKLGK

A0A2G5DBA6 Flap endonuclease 11.8e-4893.58Show/hide
Query:  IVVGRSGTEMLTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQ
        IVVGRSGTEMLTNEAGEVT YVFDGKPPDLKKQELAKRYSKRADATEDLA AIE G+KEDIEKFSKRTVKVTKQHNDDCK+LLRLMGVPVIEAPSEAEA+
Subjt:  IVVGRSGTEMLTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQ

Query:  CAALCKLGK
        CAALCK GK
Subjt:  CAALCKLGK

A0A5D3CFP9 Flap endonuclease 17.9e-4984.5Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGRSGTEMLTNEAGEVTS                    YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPVIEAPSEAEAQCAALCKLGK
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK

SwissProt top hitse value%identityAlignment
B4FHY0 Flap endonuclease 15.8e-4170.4Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGR+G E LTNEAGEVTS                    YVFDGKPPD+KKQELAKRYSKR DAT+DL +A+EVG+K+ IEK SKRTVKVT+QHN+DCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALC
        RLLRLMGVPV+EAPSEAEA+CAALC
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALC

B8AW67 Flap endonuclease 1-A3.8e-4069.6Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGR+G E LTNEAGEVTS                    YVFDGKPPDLKKQELAKRYSKR DAT++L +A+E G+K+ IEKFSKRTVKVTKQHN++CK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALC
        RLLRLMGVPV+EAP EAEA+CAALC
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALC

C5YUK3 Flap endonuclease 1-A2.2e-4067.44Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGR+G E LTNEAGEVTS                    YVFDGKPPD+KK+ELAKR+SKR DAT DL +A+E G+K+ +EK SKRTVKVT QHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPV+EAPSEAEA+CAALCK  K
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK

C6TEX6 Flap endonuclease 14.9e-4878.29Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGRSGTEMLTNEAGEVTS                    YVFDGKPPDLKKQELAKRYSKRA+ATEDL++A+E  NKEDIEKFSKRTVKVTKQHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPV+EAPSEAEAQCAALCK GK
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK

O65251 Flap endonuclease 11.0e-4575.97Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGR+GTEMLTNEAGEVTS                    YVFDGKPP+LK+QELAKRYSKRADAT DL  AIE GNKEDIEK+SKRTVKVTKQHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPV+EA SEAEAQCAALCK GK
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK

Arabidopsis top hitse value%identityAlignment
AT1G01880.1 5'-3' exonuclease family protein7.6e-0430.61Show/hide
Query:  LTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLG
        L ++ G    +V DG P  LK Q    R+ + +         I+ G   +  K     V+       +C  LL L+G+PV++A  EAEA CA L   G
Subjt:  LTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLG

AT5G26680.1 5'-3' exonuclease family protein7.3e-4775.97Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGR+GTEMLTNEAGEVTS                    YVFDGKPP+LK+QELAKRYSKRADAT DL  AIE GNKEDIEK+SKRTVKVTKQHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPV+EA SEAEAQCAALCK GK
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK

AT5G26680.2 5'-3' exonuclease family protein7.3e-4775.97Show/hide
Query:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK
        IVVGR+GTEMLTNEAGEVTS                    YVFDGKPP+LK+QELAKRYSKRADAT DL  AIE GNKEDIEK+SKRTVKVTKQHNDDCK
Subjt:  IVVGRSGTEMLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCK

Query:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK
        RLLRLMGVPV+EA SEAEAQCAALCK GK
Subjt:  RLLRLMGVPVIEAPSEAEAQCAALCKLGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATTAAGATTGTCGTGGGAAGAAGTGGGACGGAGATGCTGACCAACGAAGCTGGTGAAGTCACAAGCTATGTCTTTGATGGCAAGCCTCCCGATTTGAAAAAACA
AGAACTTGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGAGGACCTGGCAGATGCAATCGAGGTTGGCAACAAGGAGGACATCGAGAAATTCAGTAAAAGGACGGTGA
AGGTTACAAAACAGCACAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATTGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAG
TTAGGAAAGGCAAGTACCCCTCTCTGCATGATAATGCTTCTTTTGTTTCTTGAATGTGGACCAATGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATTAAGATTGTCGTGGGAAGAAGTGGGACGGAGATGCTGACCAACGAAGCTGGTGAAGTCACAAGCTATGTCTTTGATGGCAAGCCTCCCGATTTGAAAAAACA
AGAACTTGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGAGGACCTGGCAGATGCAATCGAGGTTGGCAACAAGGAGGACATCGAGAAATTCAGTAAAAGGACGGTGA
AGGTTACAAAACAGCACAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATTGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCGCTTTGCAAG
TTAGGAAAGGCAAGTACCCCTCTCTGCATGATAATGCTTCTTTTGTTTCTTGAATGTGGACCAATGAACTAA
Protein sequenceShow/hide protein sequence
MGIKIVVGRSGTEMLTNEAGEVTSYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCK
LGKASTPLCMIMLLLFLECGPMN