; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037640 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037640
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase COP1-like
Genome locationscaffold2:50958390..50962795
RNA-Seq ExpressionSpg037640
SyntenySpg037640
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8725369.1 hypothetical protein F3Y22_tig00008957pilonHSYRG00158 [Hibiscus syriacus]6.7e-0724.84Show/hide
Query:  FLFKRGFSGDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQ---DFPAC-----------------
        F+F      DL   +   +T H W++F   P  VN+ +V+E Y+NI E   + V+V G+++ ++  AIN  + LQ   D  A                  
Subjt:  FLFKRGFSGDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQ---DFPAC-----------------

Query:  -------------------KIIAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAEDVIL
                           + +  ++  C ++    L FPN I  LC++  VPE   D +L
Subjt:  -------------------KIIAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAEDVIL

KAF4378427.1 hypothetical protein F8388_021621 [Cannabis sativa]6.5e-1028.37Show/hide
Query:  RFVSHFARAKYIDMLK-RDFLFKRGF------SGDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEE-GFQVIVRGVAVDWSPGAINSLYNL
        +F+S  A AKY D ++ ++F  +RG        G +P +L   I    WE  C  P     QVV+E YAN +  E    +IVR V V +S   IN  + L
Subjt:  RFVSHFARAKYIDMLK-RDFLFKRGF------SGDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEE-GFQVIVRGVAVDWSPGAINSLYNL

Query:  Q----DFPAC---------------------------------------------------KIIAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAED
        +    +F  C                                                   K++A  IF C  +  GKLFFP  I+ LC+ AGVP   ED
Subjt:  Q----DFPAC---------------------------------------------------KIIAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAED

Query:  VILLDKGI
          +  KG+
Subjt:  VILLDKGI

PON42276.1 hypothetical protein PanWU01x14_283280 [Parasponia andersonii]1.4e-0737.76Show/hide
Query:  SHFARAKYIDMLK-RDFLFKRGFSGD------LPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQD
        S  A  +Y + ++ R    ++GF GD       P F+   IT H W+LFC+ P+ + + +VRE YAN+   +   V VRGV V  S  AIN++Y L D
Subjt:  SHFARAKYIDMLK-RDFLFKRGFSGD------LPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQD

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]3.2e-0923.96Show/hide
Query:  GDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQD--------------------------------
        G LP   +V IT H W+ FC+ P+     +VRE YAN+ + E   V VRGV V WS  AIN+++ L D                                
Subjt:  GDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQD--------------------------------

Query:  --------------FPACKI----------------------------------------IAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAEDVIL
                       PA K+                                        I  EI  C  +K G LFFP+ I+ LC+ A  P    +  L
Subjt:  --------------FPACKI----------------------------------------IAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAEDVIL

Query:  LDKGIINTLNLARL------QRTQEACQ-----------GGLVCGIHQILEQLTLSASMQEF--------AERQTHTFWNYVKRRDVA
         + G I+ + +AR+      + TQ+               G +    + LEQ      +Q++          +Q   FW Y K RD A
Subjt:  LDKGIINTLNLARL------QRTQEACQ-----------GGLVCGIHQILEQLTLSASMQEF--------AERQTHTFWNYVKRRDVA

PON65868.1 hypothetical protein PanWU01x14_113570 [Parasponia andersonii]5.1e-0737.62Show/hide
Query:  RFVSHFARAKYIDMLK-RDFLFKRGFSGD------LPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQ
        +F S  A  +Y + ++ R    ++GF GD       P F+   IT H W+LFC+ P+     +VRE YAN+   +   V VRGV V  S  AIN++Y L 
Subjt:  RFVSHFARAKYIDMLK-RDFLFKRGFSGD------LPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQ

Query:  D
        D
Subjt:  D

TrEMBL top hitse value%identityAlignment
A0A2P5B0K0 Uncharacterized protein6.5e-0837.76Show/hide
Query:  SHFARAKYIDMLK-RDFLFKRGFSGD------LPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQD
        S  A  +Y + ++ R    ++GF GD       P F+   IT H W+LFC+ P+ + + +VRE YAN+   +   V VRGV V  S  AIN++Y L D
Subjt:  SHFARAKYIDMLK-RDFLFKRGFSGD------LPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQD

A0A2P5BCG4 Uncharacterized protein (Fragment)1.6e-0923.96Show/hide
Query:  GDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQD--------------------------------
        G LP   +V IT H W+ FC+ P+     +VRE YAN+ + E   V VRGV V WS  AIN+++ L D                                
Subjt:  GDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQD--------------------------------

Query:  --------------FPACKI----------------------------------------IAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAEDVIL
                       PA K+                                        I  EI  C  +K G LFFP+ I+ LC+ A  P    +  L
Subjt:  --------------FPACKI----------------------------------------IAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAEDVIL

Query:  LDKGIINTLNLARL------QRTQEACQ-----------GGLVCGIHQILEQLTLSASMQEF--------AERQTHTFWNYVKRRDVA
         + G I+ + +AR+      + TQ+               G +    + LEQ      +Q++          +Q   FW Y K RD A
Subjt:  LDKGIINTLNLARL------QRTQEACQ-----------GGLVCGIHQILEQLTLSASMQEF--------AERQTHTFWNYVKRRDVA

A0A2P5CXV1 Uncharacterized protein2.5e-0737.62Show/hide
Query:  RFVSHFARAKYIDMLK-RDFLFKRGFSGD------LPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQ
        +F S  A  +Y + ++ R    ++GF GD       P F+   IT H W+LFC+ P+     +VRE YAN+   +   V VRGV V  S  AIN++Y L 
Subjt:  RFVSHFARAKYIDMLK-RDFLFKRGFSGD------LPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQ

Query:  D
        D
Subjt:  D

A0A7J6G6G2 Fanconi-associated nuclease3.1e-1028.37Show/hide
Query:  RFVSHFARAKYIDMLK-RDFLFKRGF------SGDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEE-GFQVIVRGVAVDWSPGAINSLYNL
        +F+S  A AKY D ++ ++F  +RG        G +P +L   I    WE  C  P     QVV+E YAN +  E    +IVR V V +S   IN  + L
Subjt:  RFVSHFARAKYIDMLK-RDFLFKRGF------SGDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEE-GFQVIVRGVAVDWSPGAINSLYNL

Query:  Q----DFPAC---------------------------------------------------KIIAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAED
        +    +F  C                                                   K++A  IF C  +  GKLFFP  I+ LC+ AGVP   ED
Subjt:  Q----DFPAC---------------------------------------------------KIIAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAED

Query:  VILLDKGI
          +  KG+
Subjt:  VILLDKGI

A0A803Q7Q1 Uncharacterized protein5.9e-0940.57Show/hide
Query:  PDPVNSQVVRELYANIVEEE-GFQVIVRGVAVDWSPGAINSLYNLQ----DFPACK--IIAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAEDVILL
        P+P   +VV+E Y N +  E   +VIV  + V +S  AIN+L+ L+     F   K  ++A EI  C  +  GKLF P TIS LC+ AGVP  +E+  L 
Subjt:  PDPVNSQVVRELYANIVEEE-GFQVIVRGVAVDWSPGAINSLYNLQ----DFPACK--IIAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAEDVILL

Query:  DKGIIN
         KG I+
Subjt:  DKGIIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACGGCTAGAGGAAAGGAGGTTGCCTTATGAGCGCTTTGTCAGTCATTTTGCTAGGGCAAAATATATTGACATGTTGAAGAGAGATTTCCTGTTCAAGAGA
GGGTTCAGTGGTGATCTTCCACACTTTTTGAGGGTTGGCATCACAAACCATGGCTGGGAGTTATTCTGTTCCAAGCCAGATCCTGTGAATTCACAAGTGGTGCGA
GAATTGTATGCGAACATTGTCGAGGAAGAGGGTTTTCAAGTGATTGTTCGTGGAGTAGCTGTCGACTGGAGTCCTGGTGCCATCAATTCACTATATAACCTTCAG
GATTTCCCCGCATGTAAAATTATCGCTGGTGAAATTTTTGGATGTTGGAGAAAGAAGGTTGGAAAACTGTTCTTTCCAAACACAATTTCAATGCTTTGTAAGAGA
GCAGGGGTTCCAGAAAGCGCAGAGGATGTGATTCTACTAGATAAGGGAATCATAAACACGCTTAACTTGGCACGGCTTCAGCGGACACAAGAGGCATGTCAAGGG
GGGTTAGTCTGTGGCATTCACCAGATCTTAGAACAACTCACACTTTCAGCCAGCATGCAAGAGTTCGCCGAGAGGCAGACTCATACCTTCTGGAATTATGTTAAA
AGACGTGATGTCGCACCTGGTCATCGCTGCGGCAAGAAGATTCTAAGAGCTAGGCTGTGGCAAGTTCTTAGGATTGAGTTAAAGGTGGTGATTATTTGTCCATGC
CGGAAGAATTATTTTGCTGCACTAGTACTTGGTTTTGCAGAATGCTCAGAAAATATTGTGGAGTGGCTTGAGAGAGCAAAATCCATGATCCAAGTGGAGTCAACC
CTAATTAGGTCAAATTTTACACGTGGAGGGCTCTCCAAGCTTCCTAGATCCGAGATTAATTCAGCTAACGCCACCTCATTTAATGAATCACATGCCGCTCACGTG
GCAGTTTTGCTCCCTGCTTTGCTGGATCACGGATTTTGCCCTTTAAAAAAACAGAGGAGAAACTGGAATTCCCGCATTTCTGGGAAGGCAAAAATGAAATGCGAA
CGCATTTATGGAAAAATAGAGGCCGTTCCGAGTCGCACGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACTGGC
mRNA sequenceShow/hide mRNA sequence
ATGGCACGGCTAGAGGAAAGGAGGTTGCCTTATGAGCGCTTTGTCAGTCATTTTGCTAGGGCAAAATATATTGACATGTTGAAGAGAGATTTCCTGTTCAAGAGA
GGGTTCAGTGGTGATCTTCCACACTTTTTGAGGGTTGGCATCACAAACCATGGCTGGGAGTTATTCTGTTCCAAGCCAGATCCTGTGAATTCACAAGTGGTGCGA
GAATTGTATGCGAACATTGTCGAGGAAGAGGGTTTTCAAGTGATTGTTCGTGGAGTAGCTGTCGACTGGAGTCCTGGTGCCATCAATTCACTATATAACCTTCAG
GATTTCCCCGCATGTAAAATTATCGCTGGTGAAATTTTTGGATGTTGGAGAAAGAAGGTTGGAAAACTGTTCTTTCCAAACACAATTTCAATGCTTTGTAAGAGA
GCAGGGGTTCCAGAAAGCGCAGAGGATGTGATTCTACTAGATAAGGGAATCATAAACACGCTTAACTTGGCACGGCTTCAGCGGACACAAGAGGCATGTCAAGGG
GGGTTAGTCTGTGGCATTCACCAGATCTTAGAACAACTCACACTTTCAGCCAGCATGCAAGAGTTCGCCGAGAGGCAGACTCATACCTTCTGGAATTATGTTAAA
AGACGTGATGTCGCACCTGGTCATCGCTGCGGCAAGAAGATTCTAAGAGCTAGGCTGTGGCAAGTTCTTAGGATTGAGTTAAAGGTGGTGATTATTTGTCCATGC
CGGAAGAATTATTTTGCTGCACTAGTACTTGGTTTTGCAGAATGCTCAGAAAATATTGTGGAGTGGCTTGAGAGAGCAAAATCCATGATCCAAGTGGAGTCAACC
CTAATTAGGTCAAATTTTACACGTGGAGGGCTCTCCAAGCTTCCTAGATCCGAGATTAATTCAGCTAACGCCACCTCATTTAATGAATCACATGCCGCTCACGTG
GCAGTTTTGCTCCCTGCTTTGCTGGATCACGGATTTTGCCCTTTAAAAAAACAGAGGAGAAACTGGAATTCCCGCATTTCTGGGAAGGCAAAAATGAAATGCGAA
CGCATTTATGGAAAAATAGAGGCCGTTCCGAGTCGCACGCGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACTGGC
Protein sequenceShow/hide protein sequence
MARLEERRLPYERFVSHFARAKYIDMLKRDFLFKRGFSGDLPHFLRVGITNHGWELFCSKPDPVNSQVVRELYANIVEEEGFQVIVRGVAVDWSPGAINSLYNLQ
DFPACKIIAGEIFGCWRKKVGKLFFPNTISMLCKRAGVPESAEDVILLDKGIINTLNLARLQRTQEACQGGLVCGIHQILEQLTLSASMQEFAERQTHTFWNYVK
RRDVAPGHRCGKKILRARLWQVLRIELKVVIICPCRKNYFAALVLGFAECSENIVEWLERAKSMIQVESTLIRSNFTRGGLSKLPRSEINSANATSFNESHAAHV
AVLLPALLDHGFCPLKKQRRNWNSRISGKAKMKCERIYGKIEAVPSRTRVVVDESSSHLTG