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Spg037648 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037648
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold2:50764087..50764638
RNA-Seq ExpressionSpg037648
SyntenySpg037648
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7821986.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]1.5e-0434.29Show/hide
Query:  LLKCHKQIGRKWKIKSIEALAIKEGLKAHN--CRNQSSSLPLIVESDAAEVIKVLNFEAIDISDTELIVNEVVSLANQAWVVSFAKCPRKGNQIAHLLAR
        L+   K++     I+ +EALA+ EG+K     C N+     +I+ESDA  V+ +LN   IDIS   L++ E++ L +    +SF    R+ N +AH LA 
Subjt:  LLKCHKQIGRKWKIKSIEALAIKEGLKAHN--CRNQSSSLPLIVESDAAEVIKVLNFEAIDISDTELIVNEVVSLANQAWVVSFAKCPRKGNQIAHLLAR

Query:  AATGF
        +   F
Subjt:  AATGF
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.4e-0532.79Show/hide
Query:  RGTKTEVFEVWDGLFVIPQGLLLKCHKQIGRKWKIKSIEALAIKEGLKAHNCRNQSSSLPLIVESDAAEVIKVLNFEAIDISDTELIVNEVVSLANQAWV
        RG    +   WDG  V+     ++          +K +EA AI EGL+  N  N     PL +E+D+AEV  +LN +  D++ T  +V E+++L +   +
Subjt:  RGTKTEVFEVWDGLFVIPQGLLLKCHKQIGRKWKIKSIEALAIKEGLKAHNCRNQSSSLPLIVESDAAEVIKVLNFEAIDISDTELIVNEVVSLANQAWV

Query:  VSFAKCPRKGNQIAHLLARAAT
        ++FAK  R+ N  AH LA+ A+
Subjt:  VSFAKCPRKGNQIAHLLARAAT
TrEMBL top hitse value%identityAlignment
A0A6J1DNV9 uncharacterized protein LOC1110224036.6e-0632.79Show/hide
Query:  RGTKTEVFEVWDGLFVIPQGLLLKCHKQIGRKWKIKSIEALAIKEGLKAHNCRNQSSSLPLIVESDAAEVIKVLNFEAIDISDTELIVNEVVSLANQAWV
        RG    +   WDG  V+     ++          +K +EA AI EGL+  N  N     PL +E+D+AEV  +LN +  D++ T  +V E+++L +   +
Subjt:  RGTKTEVFEVWDGLFVIPQGLLLKCHKQIGRKWKIKSIEALAIKEGLKAHNCRNQSSSLPLIVESDAAEVIKVLNFEAIDISDTELIVNEVVSLANQAWV

Query:  VSFAKCPRKGNQIAHLLARAAT
        ++FAK  R+ N  AH LA+ A+
Subjt:  VSFAKCPRKGNQIAHLLARAAT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCGTGGAACGAAGACCGAAGTATTCGAGGTGTGGGATGGATTGTTCGTGATTCCTCAGGGTCTCTTATTGAAGTGCCACAAGCAAATTGGGCGAAAGTGGAAAAT
TAAATCTATCGAAGCCCTTGCTATCAAGGAAGGTCTCAAAGCTCATAATTGCAGAAATCAAAGTAGCAGTTTACCTCTGATCGTAGAATCAGATGCTGCGGAGGTCATCA
AGGTGCTCAACTTCGAAGCCATCGACATCTCAGACACTGAGCTGATCGTGAATGAGGTGGTCTCCCTGGCGAATCAAGCATGGGTGGTTTCGTTCGCTAAATGTCCGAGG
AAGGGCAATCAAATTGCGCATCTCCTAGCGCGCGCAGCGACCGGTTTCTCGCCGTTGGTTCATCTGTCGTCTGATGTCGACGGTGGTGGGTTTTTGTCGTCAATTTTTTG
TTTGGCTTCCACTCTGGAAGGCTATTTCTTGGAAAGAGATTCTCATATCCCTGGTTGGTTGGCCTCTTTAATTGAGGAAGATTACCGTGTACCTAACTTTGTTCCTTATT
AA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCGTGGAACGAAGACCGAAGTATTCGAGGTGTGGGATGGATTGTTCGTGATTCCTCAGGGTCTCTTATTGAAGTGCCACAAGCAAATTGGGCGAAAGTGGAAAAT
TAAATCTATCGAAGCCCTTGCTATCAAGGAAGGTCTCAAAGCTCATAATTGCAGAAATCAAAGTAGCAGTTTACCTCTGATCGTAGAATCAGATGCTGCGGAGGTCATCA
AGGTGCTCAACTTCGAAGCCATCGACATCTCAGACACTGAGCTGATCGTGAATGAGGTGGTCTCCCTGGCGAATCAAGCATGGGTGGTTTCGTTCGCTAAATGTCCGAGG
AAGGGCAATCAAATTGCGCATCTCCTAGCGCGCGCAGCGACCGGTTTCTCGCCGTTGGTTCATCTGTCGTCTGATGTCGACGGTGGTGGGTTTTTGTCGTCAATTTTTTG
TTTGGCTTCCACTCTGGAAGGCTATTTCTTGGAAAGAGATTCTCATATCCCTGGTTGGTTGGCCTCTTTAATTGAGGAAGATTACCGTGTACCTAACTTTGTTCCTTATT
AA
Protein sequenceShow/hide protein sequence
MLRGTKTEVFEVWDGLFVIPQGLLLKCHKQIGRKWKIKSIEALAIKEGLKAHNCRNQSSSLPLIVESDAAEVIKVLNFEAIDISDTELIVNEVVSLANQAWVVSFAKCPR
KGNQIAHLLARAATGFSPLVHLSSDVDGGGFLSSIFCLASTLEGYFLERDSHIPGWLASLIEEDYRVPNFVPY