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Spg037699 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037699
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold1:34194056..34200165
RNA-Seq ExpressionSpg037699
SyntenySpg037699
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]1.4e-0944.76Show/hide
Query:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPTSAES
        +YKL+QKLYLV C VFENEEF VY +N G VLRKLWV EVR                                          VEIEL  P+ LPTSAES
Subjt:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPTSAES

Query:  SRTSS
        SR++S
Subjt:  SRTSS

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]8.3e-0737.21Show/hide
Query:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPTSAES
        V++ +Q LYLV CRVF +E+F VY +N G VLRKLWV EVR                                          VEIEL VPDT PTSAES
Subjt:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPTSAES

Query:  SRTSSRIVKLLERSVGQAVFILYRVIKVK
        S ++S    ++    G  V  L+ V + K
Subjt:  SRTSSRIVKLLERSVGQAVFILYRVIKVK

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.9e-0738.82Show/hide
Query:  PTTDKLTFQAIFSSFLHHFPFKSSELLRERVKEEEDEEFRGF------EHAG-------------------VYKLHQKLYL------------------V
        PTT KL FQ  F SFLHHFP K  E   ERVKEEE EEFR        E  G                   V+K +QKLYL                   
Subjt:  PTTDKLTFQAIFSSFLHHFPFKSSELLRERVKEEEDEEFRGF------EHAG-------------------VYKLHQKLYL------------------V

Query:  CCRVFENEEFDVYCLNCGSVLRKLWVFEVRVEIELSVPDTLPTSAESSRTSS
          +  E ++  ++ L+  SVLR     +  VEIEL VPD LPTSA+SS ++S
Subjt:  CCRVFENEEFDVYCLNCGSVLRKLWVFEVRVEIELSVPDTLPTSAESSRTSS

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]9.8e-0843.75Show/hide
Query:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPT
        V+K +QKLYLV CRV ENE+F VY +NCG VLRKLWV EVR                                          VEIEL VPDTLPT
Subjt:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPT

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]1.4e-0634.93Show/hide
Query:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR-----------------------------------------------------------
        V+K +QKLYLV CRVFENE F VY +N G VLRKLWV E R                                                           
Subjt:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR-----------------------------------------------------------

Query:  VEIELSVPDTLPTSAESSRTSSRIVKLLERSVGQAVFILYRVIKVK
        VEIEL VPDTLPTSAES  ++ R   ++    G  V  L+ V + K
Subjt:  VEIELSVPDTLPTSAESSRTSSRIVKLLERSVGQAVFILYRVIKVK

TrEMBL top hitse value%identityAlignment
A0A5A7UFD2 Uncharacterized protein6.6e-1044.76Show/hide
Query:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPTSAES
        +YKL+QKLYLV C VFENEEF VY +N G VLRKLWV EVR                                          VEIEL  P+ LPTSAES
Subjt:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPTSAES

Query:  SRTSS
        SR++S
Subjt:  SRTSS

A0A5D3BQ75 Uncharacterized protein4.0e-0737.21Show/hide
Query:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPTSAES
        V++ +Q LYLV CRVF +E+F VY +N G VLRKLWV EVR                                          VEIEL VPDT PTSAES
Subjt:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPTSAES

Query:  SRTSSRIVKLLERSVGQAVFILYRVIKVK
        S ++S    ++    G  V  L+ V + K
Subjt:  SRTSSRIVKLLERSVGQAVFILYRVIKVK

A0A5D3BZ50 Pentatricopeptide repeat-containing protein2.4e-0738.82Show/hide
Query:  PTTDKLTFQAIFSSFLHHFPFKSSELLRERVKEEEDEEFRGF------EHAG-------------------VYKLHQKLYL------------------V
        PTT KL FQ  F SFLHHFP K  E   ERVKEEE EEFR        E  G                   V+K +QKLYL                   
Subjt:  PTTDKLTFQAIFSSFLHHFPFKSSELLRERVKEEEDEEFRGF------EHAG-------------------VYKLHQKLYL------------------V

Query:  CCRVFENEEFDVYCLNCGSVLRKLWVFEVRVEIELSVPDTLPTSAESSRTSS
          +  E ++  ++ L+  SVLR     +  VEIEL VPD LPTSA+SS ++S
Subjt:  CCRVFENEEFDVYCLNCGSVLRKLWVFEVRVEIELSVPDTLPTSAESSRTSS

A0A5D3CJL4 Retrotrans_gag domain-containing protein4.7e-0843.75Show/hide
Query:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPT
        V+K +QKLYLV CRV ENE+F VY +NCG VLRKLWV EVR                                          VEIEL VPDTLPT
Subjt:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR------------------------------------------VEIELSVPDTLPT

A0A5D3CSJ5 Putative polyprotein6.9e-0734.93Show/hide
Query:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR-----------------------------------------------------------
        V+K +QKLYLV CRVFENE F VY +N G VLRKLWV E R                                                           
Subjt:  VYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVR-----------------------------------------------------------

Query:  VEIELSVPDTLPTSAESSRTSSRIVKLLERSVGQAVFILYRVIKVK
        VEIEL VPDTLPTSAES  ++ R   ++    G  V  L+ V + K
Subjt:  VEIELSVPDTLPTSAESSRTSSRIVKLLERSVGQAVFILYRVIKVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATGACAGCAAGACACCCACCACCGACAAGCTCACTTTTCAGGCCATTTTCAGTTCATTCCTCCATCATTTTCCATTCAAATCTTCAGAGCTCTTGAGGGAGAG
AGTGAAGGAGGAAGAAGACGAAGAATTTCGTGGTTTTGAGCATGCTGGGGTGTACAAGTTGCATCAGAAGCTCTATTTGGTATGTTGTAGAGTGTTCGAAAATGAAGAGT
TTGATGTGTATTGCCTTAATTGTGGTTCAGTATTGAGGAAGTTATGGGTGTTTGAAGTTAGGGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAA
AGTTCCAGAACAAGTTCCAGAATTGTGAAATTGCTAGAAAGATCCGTGGGCCAAGCTGTTTTTATTTTATACCGAGTTATTAAGGTAAAGGCAAGGGTGTACAGAATGCG
TGACGAAATGATGCTGGTTGAGCCATGGATTCTCGTAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATGACAGCAAGACACCCACCACCGACAAGCTCACTTTTCAGGCCATTTTCAGTTCATTCCTCCATCATTTTCCATTCAAATCTTCAGAGCTCTTGAGGGAGAG
AGTGAAGGAGGAAGAAGACGAAGAATTTCGTGGTTTTGAGCATGCTGGGGTGTACAAGTTGCATCAGAAGCTCTATTTGGTATGTTGTAGAGTGTTCGAAAATGAAGAGT
TTGATGTGTATTGCCTTAATTGTGGTTCAGTATTGAGGAAGTTATGGGTGTTTGAAGTTAGGGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAA
AGTTCCAGAACAAGTTCCAGAATTGTGAAATTGCTAGAAAGATCCGTGGGCCAAGCTGTTTTTATTTTATACCGAGTTATTAAGGTAAAGGCAAGGGTGTACAGAATGCG
TGACGAAATGATGCTGGTTGAGCCATGGATTCTCGTAGGATAG
Protein sequenceShow/hide protein sequence
MGNDSKTPTTDKLTFQAIFSSFLHHFPFKSSELLRERVKEEEDEEFRGFEHAGVYKLHQKLYLVCCRVFENEEFDVYCLNCGSVLRKLWVFEVRVEIELSVPDTLPTSAE
SSRTSSRIVKLLERSVGQAVFILYRVIKVKARVYRMRDEMMLVEPWILVG