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Spg037704 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037704
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold1:33902131..33902776
RNA-Seq ExpressionSpg037704
SyntenySpg037704
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL96670.1 hypothetical protein [Colocasia esculenta]4.0e-2034.91Show/hide
Query:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSI---------------------EELLRSKRSEHKRYS-
        +G R Q +   SLL V+Q+ GE+L D+I RF+ +AL++ R    +A  A+     D  L  ++                     EE L + R+E    S 
Subjt:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSI---------------------EELLRSKRSEHKRYS-

Query:  -------SFDRDQKKGKRQ----------------RIDEEQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYL
                 DRD+KKG+R                  +  EQIL EIRN   +  P++++S+P KRD+ +YC FHRDHGH T  C QLKD+IE LI+ GYL
Subjt:  -------SFDRDQKKGKRQ----------------RIDEEQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYL

Query:  KKFTTKAEAEQR
         +F  + E   R
Subjt:  KKFTTKAEAEQR

MQM13883.1 hypothetical protein [Colocasia esculenta]6.8e-2034.6Show/hide
Query:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLN--------------------SIEELLRSKRSEHKRYS--
        +G R Q +   SLL V+Q+ GE+L D++ RF+ +AL++ R    +A  A+     D  LL                     + EE L + R+E    S  
Subjt:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLN--------------------SIEELLRSKRSEHKRYS--

Query:  ------SFDRDQKKGKRQR----------------IDEEQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLK
                DRD+KKG+R                  +  EQIL EIRN   +  P++++S+P +RD+ +YC FHRDHGH T  C QLKD+IE LI+ GYL 
Subjt:  ------SFDRDQKKGKRQR----------------IDEEQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLK

Query:  KFTTKAEAEQR
        +F  + E   R
Subjt:  KFTTKAEAEQR

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]6.6e-2335.85Show/hide
Query:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLL--------NSIEELLR-------------------SKRSE
        +G R + +P   LLT+KQ+  ESLRDY+ RF ++ LQVE  ++ V+++A  + + DE L         N+  E L                     KR++
Subjt:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLL--------NSIEELLR-------------------SKRSE

Query:  HKRYSSFDRDQ--KKGKRQRIDE-----------------EQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGY
         KR  S D+ Q  +  KR R  +                 EQ+LMEI++  LL  P ++K++  KR KG+YCLFHRDHGH+T++C  LK+++E LIR GY
Subjt:  HKRYSSFDRDQ--KKGKRQRIDE-----------------EQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGY

Query:  LKKFTTKAEAEQ
        LK++  + +A Q
Subjt:  LKKFTTKAEAEQ

XP_023888238.1 uncharacterized protein LOC112000356 [Quercus suber]4.0e-2036.76Show/hide
Query:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSIEELLRSKRSEHKRYSSFDRDQKKGKRQRIDE------
        +G    +K    L+++KQ+  E+LR YIT F K+AL +   ++ + + A T  L  E  L + E+    K  + +R     RDQ   KR RID+      
Subjt:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSIEELLRSKRSEHKRYSSFDRDQKKGKRQRIDE------

Query:  ------------------EQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKFTTK
                          +Q+LM+I++   L  P KLKS+P KR + +YC FHRDHGH T +C  LK +IEALIR G L+KF  K
Subjt:  ------------------EQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKFTTK

XP_038701827.1 uncharacterized protein LOC119998550 [Tripterygium wilfordii]4.0e-2035.33Show/hide
Query:  AREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSIEELLRSKRSEHKRYSSFDRDQKKGKRQRIDE--EQILME
        AR   K  + L+ +  +PGESLR ++ RF +  L++      VAI A+   + DE  + S+ +  + ++S  + Y+  D+  +     +I      IL+E
Subjt:  AREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSIEELLRSKRSEHKRYSSFDRDQKKGKRQRIDE--EQILME

Query:  IRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKFTTKAEAEQR
        + + ++L  P+K+++  +KR   +YCLFH+DHGH T  C  LKD+IE LIR GYLK+FT+  E ++R
Subjt:  IRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKFTTKAEAEQR

TrEMBL top hitse value%identityAlignment
A0A2N9HJ21 Ribonuclease H2.8e-1934.92Show/hide
Query:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSI---------EELLRSKRSEHKRYSSFDRDQKKGKRQR
        +GA+   +P   LL +KQ+ GE+LR Y+TRF K+ L V+   + V + A  + L+    L S+         E +  ++R  +   +   RDQ  GK+++
Subjt:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSI---------EELLRSKRSEHKRYSSFDRDQKKGKRQR

Query:  IDEEQ-------------ILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKFTTKAEAEQR
           E+             I M+IRN   L  P KL ++PDKR + +YC FHRDHGH+T +C  LK +IE LI+ G L++F  + + E R
Subjt:  IDEEQ-------------ILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKFTTKAEAEQR

A0A2N9IUL6 Uncharacterized protein2.1e-1937.14Show/hide
Query:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLL--------NSIEELLRSK------RSEHKRYSSFDRDQKK
        +G R   +P   LL ++Q+ GESLR Y+ RF K+A+Q++  +E VA+ A  A L     L         S+ EL+         ++E K  S  +R +++
Subjt:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLL--------NSIEELLRSK------RSEHKRYSSFDRDQKK

Query:  GKR---QRIDEEQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKF
                +  +Q+L++I++   +  P KL+S+P+KR K  YC FHRDHGH+T +C  LK++IEALIR G L KF
Subjt:  GKR---QRIDEEQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKF

A0A6J1DWY0 uncharacterized protein LOC1110252933.2e-2335.85Show/hide
Query:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLL--------NSIEELLR-------------------SKRSE
        +G R + +P   LLT+KQ+  ESLRDY+ RF ++ LQVE  ++ V+++A  + + DE L         N+  E L                     KR++
Subjt:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLL--------NSIEELLR-------------------SKRSE

Query:  HKRYSSFDRDQ--KKGKRQRIDE-----------------EQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGY
         KR  S D+ Q  +  KR R  +                 EQ+LMEI++  LL  P ++K++  KR KG+YCLFHRDHGH+T++C  LK+++E LIR GY
Subjt:  HKRYSSFDRDQ--KKGKRQRIDE-----------------EQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGY

Query:  LKKFTTKAEAEQ
        LK++  + +A Q
Subjt:  LKKFTTKAEAEQ

A0A6J1DYL6 uncharacterized protein LOC1110257857.4e-2034.43Show/hide
Query:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSI---------EELLRS------------------KRSE
        +G R + +P   LLT+KQ+  ESL DY+ RF K+ LQ+E  ++ V+++A  + + DE L  S          E L R+                  KR++
Subjt:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSI---------EELLRS------------------KRSE

Query:  HKRYSSFDRDQ--KKGKRQRIDE-----------------EQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGY
         KR  S D+ Q  +  KR R  +                 EQ+LMEI++  LL  P ++K    KR KG+YCLFHRDH H+T++   LK+++E LIR GY
Subjt:  HKRYSSFDRDQ--KKGKRQRIDE-----------------EQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGY

Query:  LKKFTTKAEAEQ
        L+++  + +A Q
Subjt:  LKKFTTKAEAEQ

A0A7J0ERN9 Retrotrans_gag domain-containing protein4.8e-1935.33Show/hide
Query:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSIEE-------LLRSKR-SEHKRYSSFDRDQKKGKRQR-
        M  R ++K    L TV Q+  ESL+D++ RF +  L VE  S+ V I+A+   L    L +S+ +        L+SK   E  RY   DRD K+   +R 
Subjt:  MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSIEE-------LLRSKR-SEHKRYSSFDRDQKKGKRQR-

Query:  ---------------IDEEQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKFTT
                           Q+L EI++   +  P K+K++P KR++ +YC FHRDHGH+T +C QL+++I  LI+ GYL+K+ T
Subjt:  ---------------IDEEQILMEIRNTNLLNVPRKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKFTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCCAGAGAACAGCGCAAACCTCATATCAGCCTTTTAACTGTCAAACAACAGCCAGGTGAGAGTTTGCGTGATTATATAACACGTTTTAAAAAGAAAGCACTACA
AGTTGAGAGATACAGTGAGGGAGTAGCTATAGTAGCCATAACAGCAGAACTGGAAGACGAGAGATTGCTTAATTCAATAGAGGAGTTGCTTAGATCGAAGAGGTCAGAGC
ACAAGAGGTATTCTTCATTCGACCGAGACCAGAAGAAGGGAAAAAGACAGCGAATAGACGAGGAGCAAATCTTGATGGAAATTCGGAATACGAACCTCCTTAACGTACCT
AGAAAGCTGAAGTCAAATCCTGACAAAAGAGACAAAGGCCAGTATTGCCTCTTCCATCGAGACCACGGGCATTCAACCAGAAATTGCATTCAACTGAAAGATAAAATTGA
AGCACTAATTCGAAATGGGTATCTGAAGAAGTTTACCACCAAGGCCGAGGCCGAACAGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCCAGAGAACAGCGCAAACCTCATATCAGCCTTTTAACTGTCAAACAACAGCCAGGTGAGAGTTTGCGTGATTATATAACACGTTTTAAAAAGAAAGCACTACA
AGTTGAGAGATACAGTGAGGGAGTAGCTATAGTAGCCATAACAGCAGAACTGGAAGACGAGAGATTGCTTAATTCAATAGAGGAGTTGCTTAGATCGAAGAGGTCAGAGC
ACAAGAGGTATTCTTCATTCGACCGAGACCAGAAGAAGGGAAAAAGACAGCGAATAGACGAGGAGCAAATCTTGATGGAAATTCGGAATACGAACCTCCTTAACGTACCT
AGAAAGCTGAAGTCAAATCCTGACAAAAGAGACAAAGGCCAGTATTGCCTCTTCCATCGAGACCACGGGCATTCAACCAGAAATTGCATTCAACTGAAAGATAAAATTGA
AGCACTAATTCGAAATGGGTATCTGAAGAAGTTTACCACCAAGGCCGAGGCCGAACAGAGATGA
Protein sequenceShow/hide protein sequence
MGAREQRKPHISLLTVKQQPGESLRDYITRFKKKALQVERYSEGVAIVAITAELEDERLLNSIEELLRSKRSEHKRYSSFDRDQKKGKRQRIDEEQILMEIRNTNLLNVP
RKLKSNPDKRDKGQYCLFHRDHGHSTRNCIQLKDKIEALIRNGYLKKFTTKAEAEQR