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Spg037715 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037715
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold1:33917969..33923348
RNA-Seq ExpressionSpg037715
SyntenySpg037715
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.7e-0743.14Show/hide
Query:  FNLPISGLPRRNRPNLQARKLAKTVEIELSVPDTLLTSAESSRSSSSSAIQ--------------------------QGQQVSFEEGDVCWLHAISLAKL
        F+  +S LPR NRPNL   KL KTVEIEL VPDTL TSAESS+S+SS+ ++                          +G        D+CWLHA+  AK 
Subjt:  FNLPISGLPRRNRPNLQARKLAKTVEIELSVPDTLLTSAESSRSSSSSAIQ--------------------------QGQQVSFEEGDVCWLHAISLAKL

Query:  AG
        AG
Subjt:  AG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.6e-0448.84Show/hide
Query:  PRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSS-SSAIQQGQQVSFEEGDVCWLHAISLAKLAG
        PR NRP+LQ  KL KT                 VEIEL VPDTL TSAES  S+S S+ I +G        DVCWLHA+  AK AG
Subjt:  PRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSS-SSAIQQGQQVSFEEGDVCWLHAISLAKLAG

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]4.8e-0447.25Show/hide
Query:  NLPISGLPRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSSSSA-IQQGQQVSFEEGDVCWLHAISLAKL
        NL    +PR NR +LQ  KL KT                 VEIEL VPDT  TSAESS S+SSSA I +G        DVCWLHA+  AK+
Subjt:  NLPISGLPRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSSSSA-IQQGQQVSFEEGDVCWLHAISLAKL

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase5.1e-0440Show/hide
Query:  PISGLPRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSSSSAIQQ----------GQQVSFEEGDVCWLHAISLAKLAG
        P    PR NRP+LQ  +L KT                 VEIEL +PDTL TSAESS S+SS+ ++           G        DVCWLHA+  AK  G
Subjt:  PISGLPRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSSSSAIQQ----------GQQVSFEEGDVCWLHAISLAKLAG

A0A5A7UAH6 CCHC-type domain-containing protein1.3e-0743.14Show/hide
Query:  FNLPISGLPRRNRPNLQARKLAKTVEIELSVPDTLLTSAESSRSSSSSAIQ--------------------------QGQQVSFEEGDVCWLHAISLAKL
        F+  +S LPR NRPNL   KL KTVEIEL VPDTL TSAESS+S+SS+ ++                          +G        D+CWLHA+  AK 
Subjt:  FNLPISGLPRRNRPNLQARKLAKTVEIELSVPDTLLTSAESSRSSSSSAIQ--------------------------QGQQVSFEEGDVCWLHAISLAKL

Query:  AG
        AG
Subjt:  AG

A0A5D3BAD1 Retrotrans_gag domain-containing protein7.9e-0548.84Show/hide
Query:  PRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSS-SSAIQQGQQVSFEEGDVCWLHAISLAKLAG
        PR NRP+LQ  KL KT                 VEIEL VPDTL TSAES  S+S S+ I +G        DVCWLHA+  AK AG
Subjt:  PRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSS-SSAIQQGQQVSFEEGDVCWLHAISLAKLAG

A0A5D3BQ75 Uncharacterized protein2.3e-0447.25Show/hide
Query:  NLPISGLPRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSSSSA-IQQGQQVSFEEGDVCWLHAISLAKL
        NL    +PR NR +LQ  KL KT                 VEIEL VPDT  TSAESS S+SSSA I +G        DVCWLHA+  AK+
Subjt:  NLPISGLPRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSSSSA-IQQGQQVSFEEGDVCWLHAISLAKL

A0A5D3D150 Reverse transcriptase5.1e-0440Show/hide
Query:  PISGLPRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSSSSAIQQ----------GQQVSFEEGDVCWLHAISLAKLAG
        P    PR NRP+LQ  +L KT                 VEIEL +PDTL TSAESS S+SS+ ++           G        DVCWLHA+  AK  G
Subjt:  PISGLPRRNRPNLQARKLAKT-----------------VEIELSVPDTLLTSAESSRSSSSSAIQQ----------GQQVSFEEGDVCWLHAISLAKLAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATTTGGGTTCAACCTGCCTATCTCTGGTTTGCCAAGAAGAAATAGGCCAAATCTACAGGCCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCTCGGTGCC
TGACACACTGCTAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTTGAGGAGGGCGATGTCTGTTGGCTTCACGCCA
TCTCCCTGGCTAAGCTAGCAGGTGATACGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCGTCCATGTAGGAGACATGCGAGTGGGGGTGTCCTATGCAATG
AGTCCATTAGGTCCCCCTGCTAGCTCGATAGCCTCGTGGTGGTGTCCGTTGAAGTATTCAGAGTCGTCCACGGAAAGGCGTAGCGTCGCGACCCTACTCAATGGAGTCGC
GACGCTTAAGAGCAGGTGCTGGAAAAATCGGGCTAGCGTCGAGATGCTTTGCTTTCAGCGTCTCGACGCTGACGGTAGTTTTCGTATTCACGGAGCCTGCGGAATGGACA
GTTTCGGCTCGGTTCAGGTGGTTTGCGGTCCGGTTTGCAGCTGGTTTGATCCGGTTCAACACAAAATGGACTGGTTCTTGGAGTATTTGCTTCAAGTTGAGCAATTTGGG
TCCGGTTCGAGCGATTTTGACACGGTTCGGGCTGGTTCTGAACGGTTTGAAGCAGTTCGAGGCAGTTCAGACCAATTACAAGGCGGTTTAGGGCTAGAGTTTGAATTACT
ATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATTTGGGTTCAACCTGCCTATCTCTGGTTTGCCAAGAAGAAATAGGCCAAATCTACAGGCCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCTCGGTGCC
TGACACACTGCTAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTTGAGGAGGGCGATGTCTGTTGGCTTCACGCCA
TCTCCCTGGCTAAGCTAGCAGGTGATACGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCGTCCATGTAGGAGACATGCGAGTGGGGGTGTCCTATGCAATG
AGTCCATTAGGTCCCCCTGCTAGCTCGATAGCCTCGTGGTGGTGTCCGTTGAAGTATTCAGAGTCGTCCACGGAAAGGCGTAGCGTCGCGACCCTACTCAATGGAGTCGC
GACGCTTAAGAGCAGGTGCTGGAAAAATCGGGCTAGCGTCGAGATGCTTTGCTTTCAGCGTCTCGACGCTGACGGTAGTTTTCGTATTCACGGAGCCTGCGGAATGGACA
GTTTCGGCTCGGTTCAGGTGGTTTGCGGTCCGGTTTGCAGCTGGTTTGATCCGGTTCAACACAAAATGGACTGGTTCTTGGAGTATTTGCTTCAAGTTGAGCAATTTGGG
TCCGGTTCGAGCGATTTTGACACGGTTCGGGCTGGTTCTGAACGGTTTGAAGCAGTTCGAGGCAGTTCAGACCAATTACAAGGCGGTTTAGGGCTAGAGTTTGAATTACT
ATTGTAA
Protein sequenceShow/hide protein sequence
MAEFGFNLPISGLPRRNRPNLQARKLAKTVEIELSVPDTLLTSAESSRSSSSSAIQQGQQVSFEEGDVCWLHAISLAKLAGDTARFVFDTDVLIQGVHVGDMRVGVSYAM
SPLGPPASSIASWWCPLKYSESSTERRSVATLLNGVATLKSRCWKNRASVEMLCFQRLDADGSFRIHGACGMDSFGSVQVVCGPVCSWFDPVQHKMDWFLEYLLQVEQFG
SGSSDFDTVRAGSERFEAVRGSSDQLQGGLGLEFELLL