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Spg037721 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037721
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:34205142..34211928
RNA-Seq ExpressionSpg037721
SyntenySpg037721
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]4.5e-2947.19Show/hide
Query:  STGFSSKAGGSLVFSAVFEHSGVYKMHKKLYLV---------------------SCRVFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAK
        STGFSSK GG LVFS       ++K ++KLYLV                     S +  E ++  ++ ++  SVLR     +  V IELPVP+ LPTSA+
Subjt:  STGFSSKAGGSLVFSAVFEHSGVYKMHKKLYLV---------------------SCRVFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAK

Query:  SSRTSSSTWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTTWYQSS
        SS ++SSTW+ELY ESVH+             ++++FNVSVGST I+RGDDVCWLHAVFRAK  GGP GGVTTW  S+
Subjt:  SSRTSSSTWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTTWYQSS

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-2750.6Show/hide
Query:  TGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL-----------VSCR----VFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSS
        TGFSSK GG LVFS       V+K ++KLYL           V  R      ++ E D  VI   S L  L   +  VEIELPVP+TLPTSA+SS ++SS
Subjt:  TGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL-----------VSCR----VFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSS

Query:  TWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTT
        TW+ELY ESVH+             ++++F+V VGST I+RGDDVCWLHAVFRAK  GGP GGVTT
Subjt:  TWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.8e-3050.31Show/hide
Query:  STGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL------VSCRVFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSSTWVELYIE
        STGFSSK GG LV S       ++K+++KLYL      +S +  E ++  ++ ++  SVLR     +    IELPVP+TLPTSA+SS ++SSTW+ELY E
Subjt:  STGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL------VSCRVFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSSTWVELYIE

Query:  SVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTTWYQSS
        SVH+             ++++FNVSVGST I+RGDDVCWLHAVFRAK  GGP GGVTTW  S+
Subjt:  SVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTTWYQSS

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-2649.68Show/hide
Query:  ISTGFSSKAGGSLVFSAVFEHSGVYKMHKKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSSTWVEL
        +STGFSSK GG LVFS       V+K ++KLYL   + +        +  E D  VI   S L  L   +  VEIELP+P+TLPTSA+SS ++SSTW+EL
Subjt:  ISTGFSSKAGGSLVFSAVFEHSGVYKMHKKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSSTWVEL

Query:  YIESVHIVNVLFNVS----------VGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVT
        Y ESVH+  + +  S           GS  I+RGDDVCWLHA+FRAK AGGP GGVT
Subjt:  YIESVHIVNVLFNVS----------VGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.5e-2750.6Show/hide
Query:  TGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL-----------VSCR----VFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSS
        TGFSSK GG LVFS       V+K ++KLYL           V  R      ++ E D  VI   S L  L   +  VEIELPVP+TLPTSA+SS ++SS
Subjt:  TGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL-----------VSCR----VFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSS

Query:  TWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTT
        TW+ELY ESVH+             ++++F+V VGST I+RGDDVCWLHAVFRAK  GGP GGVTT
Subjt:  TWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTT

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.0e-2649.68Show/hide
Query:  ISTGFSSKAGGSLVFSAVFEHSGVYKMHKKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSSTWVEL
        +STGFSSK GG LVFS       V+K ++KLYL   + +        +  E D  VI   S L  L   +  VEIELP+P+TLPTSA+SS ++SSTW+EL
Subjt:  ISTGFSSKAGGSLVFSAVFEHSGVYKMHKKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSSTWVEL

Query:  YIESVHIVNVLFNVS----------VGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVT
        Y ESVH+  + +  S           GS  I+RGDDVCWLHA+FRAK AGGP GGVT
Subjt:  YIESVHIVNVLFNVS----------VGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVT

A0A5A7UT17 CCHC-type domain-containing protein2.2e-2947.19Show/hide
Query:  STGFSSKAGGSLVFSAVFEHSGVYKMHKKLYLV---------------------SCRVFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAK
        STGFSSK GG LVFS       ++K ++KLYLV                     S +  E ++  ++ ++  SVLR     +  V IELPVP+ LPTSA+
Subjt:  STGFSSKAGGSLVFSAVFEHSGVYKMHKKLYLV---------------------SCRVFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAK

Query:  SSRTSSSTWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTTWYQSS
        SS ++SSTW+ELY ESVH+             ++++FNVSVGST I+RGDDVCWLHAVFRAK  GGP GGVTTW  S+
Subjt:  SSRTSSSTWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTTWYQSS

A0A5A7V9N3 Reverse transcriptase7.1e-2850.6Show/hide
Query:  TGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL-----------VSCR----VFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSS
        TGFSSK GG LVFS       V+K ++KLYL           V  R      ++ E D  VI   S L  L   +  VEIELPVP+TLPTSA+SS ++SS
Subjt:  TGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL-----------VSCR----VFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSS

Query:  TWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTT
        TW+ELY ESVH+             ++++F+V VGST I+RGDDVCWLHAVFRAK  GGP GGVTT
Subjt:  TWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTT

A0A5D3CJX3 CCHC-type domain-containing protein8.9e-3150.31Show/hide
Query:  STGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL------VSCRVFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSSTWVELYIE
        STGFSSK GG LV S       ++K+++KLYL      +S +  E ++  ++ ++  SVLR     +    IELPVP+TLPTSA+SS ++SSTW+ELY E
Subjt:  STGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL------VSCRVFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSSTWVELYIE

Query:  SVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTTWYQSS
        SVH+             ++++FNVSVGST I+RGDDVCWLHAVFRAK  GGP GGVTTW  S+
Subjt:  SVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTTWYQSS

A0A5D3DSY7 Putative Retrotransposon protein7.1e-2850.6Show/hide
Query:  TGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL-----------VSCR----VFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSS
        TGFSSK GG LVFS       V+K ++KLYL           V  R      ++ E D  VI   S L  L   +  VEIELPVP+TLPTSA+SS ++SS
Subjt:  TGFSSKAGGSLVFSAVFEHSGVYKMHKKLYL-----------VSCR----VFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSS

Query:  TWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTT
        TW+ELY ESVH+             ++++F+V VGST I+RGDDVCWLHAVFRAK  GGP GGVTT
Subjt:  TWVELYIESVHI-------------VNVLFNVSVGSTRIIRGDDVCWLHAVFRAKLAGGPRGGVTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCAGTTGCCGCCGTCACCTTCTCCGTTGAGAACCGCCGCACGTCGATTTTTACCTCACGCCGCCGTCTGCTTCACCACGCGTCGCCGTCTATTCGCCGTCGCACA
CGAGCCGCCGCCGGTGAGCTTTATTTTGGGTTTTCTCTCTCTTGTTTCTTTCTCTCTCTCAGAACTCTCTCTCTCTATTTTCTATCGAACGAACCAGACTTCCACCGCTC
AGAATCAAATCGTCGTCGCCGCCACCTTAAGACAAACAGCCCCAGCACCGCTGTTGCCTTTCAGATCTGTTCATTGCCTTTCAGATCTGTCCGTCGCTGCCGTTCGATTT
TTAAGCTTTGCTTCTAAAGAATTAGTTGGACTTGGCTCCACTGACTGGGTGCCTTCTACTATCAGTAGGAGTGGAGATCTCCCAAAATACCCACTTGTGCACCTTCATAG
TGGTTCCGCTTTAGAGATCATGCCTCCCCGTGAACGAGGCCGTGGAAGAGGTCGTGGAAAAGGCCGTGGTAGGGGTCGTACAGCCCCTGAAGCAGTTGTGCCACCATTGG
GGCATGGAGATAATCTACCAGAAGATCCGCAAATTGAACAGCCGGGACCTGCAGCAGAACCTGTCACAGTGGATGCCATCCAGGCAATTAGCACAGGATTTTCGAGCAAA
GCAGGAGGATCTCTGGTTTTCTCTGCTGTTTTTGAGCATTCTGGGGTGTACAAGATGCATAAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGA
TGTGTATGTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTAAAAGTT
CCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTTCAGTAGGGTCAACAAGGATCATTAGAGGTGACGAT
GTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATCAGTTGCCGCCGTCACCTTCTCCGTTGAGAACCGCCGCACGTCGATTTTTACCTCACGCCGCCGTCTGCTTCACCACGCGTCGCCGTCTATTCGCCGTCGCACA
CGAGCCGCCGCCGGTGAGCTTTATTTTGGGTTTTCTCTCTCTTGTTTCTTTCTCTCTCTCAGAACTCTCTCTCTCTATTTTCTATCGAACGAACCAGACTTCCACCGCTC
AGAATCAAATCGTCGTCGCCGCCACCTTAAGACAAACAGCCCCAGCACCGCTGTTGCCTTTCAGATCTGTTCATTGCCTTTCAGATCTGTCCGTCGCTGCCGTTCGATTT
TTAAGCTTTGCTTCTAAAGAATTAGTTGGACTTGGCTCCACTGACTGGGTGCCTTCTACTATCAGTAGGAGTGGAGATCTCCCAAAATACCCACTTGTGCACCTTCATAG
TGGTTCCGCTTTAGAGATCATGCCTCCCCGTGAACGAGGCCGTGGAAGAGGTCGTGGAAAAGGCCGTGGTAGGGGTCGTACAGCCCCTGAAGCAGTTGTGCCACCATTGG
GGCATGGAGATAATCTACCAGAAGATCCGCAAATTGAACAGCCGGGACCTGCAGCAGAACCTGTCACAGTGGATGCCATCCAGGCAATTAGCACAGGATTTTCGAGCAAA
GCAGGAGGATCTCTGGTTTTCTCTGCTGTTTTTGAGCATTCTGGGGTGTACAAGATGCATAAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGA
TGTGTATGTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTAAAAGTT
CCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTTCAGTAGGGTCAACAAGGATCATTAGAGGTGACGAT
GTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGAGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MYQLPPSPSPLRTAARRFLPHAAVCFTTRRRLFAVAHEPPPVSFILGFLSLVSFSLSELSLSIFYRTNQTSTAQNQIVVAATLRQTAPAPLLPFRSVHCLSDLSVAAVRF
LSFASKELVGLGSTDWVPSTISRSGDLPKYPLVHLHSGSALEIMPPRERGRGRGRGKGRGRGRTAPEAVVPPLGHGDNLPEDPQIEQPGPAAEPVTVDAIQAISTGFSSK
AGGSLVFSAVFEHSGVYKMHKKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPNTLPTSAKSSRTSSSTWVELYIESVHIVNVLFNVSVGSTRIIRGDD
VCWLHAVFRAKLAGGPRGGVTTWYQSS