CuGenDBv2

Gene ID	Spg037723
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	carbon catabolite repressor protein 4 homolog 1-like
Genome location	scaffold1:33865484..33867219
RNA-Seq Expression	Spg037723
Synteny	Spg037723
Gene Ontology terms	GO:0000289 - nuclear-transcribed mRNA poly(A) tail shortening (biological process) GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0030014 - CCR4-NOT complex (cellular component) GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6603172.1 Carbon catabolite repressor protein 4-like 1, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-20

98.08

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAP+DGYFLKYK
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

XP_022928742.1 carbon catabolite repressor protein 4 homolog 1-like [Cucurbita moschata]

1.2e-20

98.08

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAP+DGYFLKYK
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

XP_031740193.1 carbon catabolite repressor protein 4 homolog 1 isoform X2 [Cucumis sativus]

4.0e-19

92.31

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        MLIVLRVHLPSDIPIVGCELTPY+LLRRPDT+V TDDVPESAP+DGYFLKYK
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

XP_038881971.1 carbon catabolite repressor protein 4 homolog 1-like isoform X1 [Benincasa hispida]

1.8e-19

94.23

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        MLIVLRVHLPSDIPIVGCELTPY+LLRRPDT+VTTDDVPESAPVDG+FLKYK
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

XP_038881974.1 carbon catabolite repressor protein 4 homolog 1-like isoform X2 [Benincasa hispida]

1.8e-19

94.23

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        MLIVLRVHLPSDIPIVGCELTPY+LLRRPDT+VTTDDVPESAPVDG+FLKYK
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYQ6 Carbon catabolite repressor protein

1.9e-19

92.31

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        MLIVLRVHLPSDIPIVGCELTPY+LLRRPDT+V TDDVPESAP+DGYFLKYK
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

A0A1S3B4X1 carbon catabolite repressor protein 4 homolog 1-like

1.9e-19

92.31

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        MLIVLRVHLPSDIPIVGCELTPY+LLRRPDT+V TDDVPESAP+DGYFLKYK
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

A0A5A7SW97 Carbon catabolite repressor protein 4-like protein 1-like

1.9e-19

92.31

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        MLIVLRVHLPSDIPIVGCELTPY+LLRRPDT+V TDDVPESAP+DGYFLKYK
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

A0A6J1EPZ5 carbon catabolite repressor protein 4 homolog 1-like

6.0e-21

98.08

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAP+DGYFLKYK
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

A0A6J1HVB6 carbon catabolite repressor protein 4 homolog 1-like

6.0e-21

98.08

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAP+DGYFLKYK
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

SwissProt top hits

e value

%identity

Alignment

Q8W0Z9 Carbon catabolite repressor protein 4 homolog 1

1.2e-18

80.77

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        ML V+RVHLPS+IPIVGCELTPYVLLRRPD T +TDDVPESAP++G+FLKY+
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

Q9M2F8 Carbon catabolite repressor protein 4 homolog 2

2.1e-18

78.85

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        ML V+RVHLPS+IPIVGCELTPYVL+RRPD   TTDDVPESAP++GYFL+Y+
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

Arabidopsis top hits

e value

%identity

Alignment

AT3G58560.1 DNAse I-like superfamily protein

8.6e-20

80.77

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        ML V+RVHLPS+IPIVGCELTPYVLLRRPD T +TDDVPESAP++G+FLKY+
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

AT3G58580.1 DNAse I-like superfamily protein

1.5e-19

78.85

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Query:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK
        ML V+RVHLPS+IPIVGCELTPYVL+RRPD   TTDDVPESAP++GYFL+Y+
Subjt:  MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

Sequences

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CDS sequence

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ATGCTGATCGTGCTACGAGTGCACCTTCCCTCTGATATCCCCATTGTAGGCTGCGAACTTACGCCCTACGTGCTCCTCCGTCGCCCAGACACCACCGTCACTACTGACGA
TGTGCCCGAGTCGGCTCCGGTTGACGGCTATTTTCTGAAATACAAGTGA

mRNA sequence

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ATGCTGATCGTGCTACGAGTGCACCTTCCCTCTGATATCCCCATTGTAGGCTGCGAACTTACGCCCTACGTGCTCCTCCGTCGCCCAGACACCACCGTCACTACTGACGA
TGTGCCCGAGTCGGCTCCGGTTGACGGCTATTTTCTGAAATACAAGTGA

Protein sequence

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MLIVLRVHLPSDIPIVGCELTPYVLLRRPDTTVTTDDVPESAPVDGYFLKYK

Spg037723 (gene) of Sponge gourd (cylindrica) v1 genome