CuGenDBv2

Gene ID	Spg037761
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	scaffold27:106348..116546
RNA-Seq Expression	Spg037761
Synteny	Spg037761
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:1901363 - heterocyclic compound binding (molecular function) GO:0097159 - organic cyclic compound binding (molecular function) GO:0043167 - ion binding (molecular function) GO:0036094 - small molecule binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0015078 - proton transmembrane transporter activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR038662 - F1F0 ATP synthase subunit C superfamily IPR035921 - F/V-ATP synthase subunit C superfamily IPR035908 - ATP synthase, F0 complex, subunit A superfamily IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily IPR023011 - ATP synthase, F0 complex, subunit A, active site IPR020537 - ATP synthase, F0 complex, subunit C, DCCD-binding site IPR018130 - Ribosomal protein S2, conserved site IPR005953 - ATP synthase, F0 complex, subunit C, bacterial/chloroplast IPR005706 - Ribosomal protein S2, bacteria/mitochondria/plastid IPR002379 - V-ATPase proteolipid subunit C-like domain IPR001865 - Ribosomal protein S2 IPR000568 - ATP synthase, F0 complex, subunit A IPR000454 - ATP synthase, F0 complex, subunit C

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ERN02618.1 hypothetical protein AMTR_s00390p00012910 [Amborella trichopoda]

5.0e-295

51.67

Show/hide

Query:  NLTYPAIFHGNSD--LLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKEDLIEYRG
        NL +P+I H N D  LLAKRRRN FII F+ +QERE EL   SSISIEIPING+FR++  SILAYFDDPQYRRKSSGITKYG IG   + KKEDLIEY G
Subjt:  NLTYPAIFHGNSD--LLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKEDLIEYRG

Query:  VKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPPERVK
        +K+ KPKYQ      ++++     H   +  S                     R+G      +KKKRIELKIFSG+I FP EMDKI RH+GILIPP RVK
Subjt:  VKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPPERVK

Query:  KNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSS
        K  K+SKK KNWIYVQWITPTKKKYFV VRPVIIYE+ADGINL TLFPQDLLQE+DNLELRVVNYILYGNGKPI GISGTSIQLVRTCL+LNWD+D KSS
Subjt:  KNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSS

Query:  SIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP------------------------------------------------------------
        S EEA   FVEVST GL+R+FLRI+L KS+  YIRKR DP                                                            
Subjt:  SIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGLPKVE
                                                                     GATVH HYG+ L EGDTLVTFIYEKSRSGDITQGLPKVE
Subjt:  ------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGLPKVE

Query:  QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNVFSPGELIG
        QVLEVRSIDSISM+LEKR+EGWN+ +TRILGIPWGFLIGAELTIVQ                                      S+DGMSNVF PGELIG
Subjt:  QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNVFSPGELIG

Query:  LLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR----------------------------------------
        LLRAERTGRALEEAICYRA+LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWL+                                        
Subjt:  LLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR----------------------------------------

Query:  ------------------------------------------------------EMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEA
                                                              EMMEAGVHFGHGT+KWNPRMAPYISAKRKGI+IINLTRTARFLSEA
Subjt:  ------------------------------------------------------EMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEA

Query:  CDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQY
        CDLVFDAASRGKQFLIVGTKNKAADSVA AA +ARCHYVNKKWLGGMLTNW TTETRLHKFRDLRTEQKTG LNRLPKRDAA+LKRQLSHLQTYLGGI+Y
Subjt:  CDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQY

Query:  MTGLPDIVIIVDQQEEYRALQEC-----------------------------------------------------------------------------
        MTGLPDIVIIVDQQEEY AL+EC                                                                             
Subjt:  MTGLPDIVIIVDQQEEYRALQEC-----------------------------------------------------------------------------

Query:  --------SAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELAAPTNDINTTVALALLT
                SAI+AVRNPQT+PTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNWSGALLPWK+I+LPHGELAAPTNDINTTVALALLT
Subjt:  --------SAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELAAPTNDINTTVALALLT

KAF9660695.1 hypothetical protein SADUNF_SadunfPtG0003600 [Salix dunnii]

0.0e+00

55.14

Show/hide

Query:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL
        I+CTG     YP I H NSDLLAKRR+N FII F+S+Q  EKEL   S I IEIPING+FRR+  SI AYFDDPQYRRKSSGITKY  IGV   +KKEDL
Subjt:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL

Query:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP
        +EYRGVK+F+PKY  QMKVDRFFFIPEEV+ILPESSS+MVRNNSI+GV T++T + +SRVGGL+R+E+KKK++ELKIFSGDIHFP   DKISR++GILIP
Subjt:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP

Query:  PERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR
        P  VK NSK+SKK KNWIYVQ ITPTKKK FV VRPV+IYE  DGINL  LFP DLLQE++NL+LRVVNYILYGNGKPI+GIS TSIQLVRTCL+LNW++
Subjt:  PERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR

Query:  DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYI-RKRKDPS-----------------------------------------------------
        DKKSSSIEEAR  FVEV  NGL+R+FLRI L KS  SYI RKR D S                                                     
Subjt:  DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYI-RKRKDPS-----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------------------------------------GATVHRHYGKILYEGDTLVTFIY
                                                                                     GATVH HYG+ILYEGDTLVTFIY
Subjt:  -----------------------------------------------------------------------------GATVHRHYGKILYEGDTLVTFIY

Query:  EKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------
        EKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+E WNE ITRI+GIPWGFLIGAELTIVQ                                      
Subjt:  EKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------

Query:  SQDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDW--------------------------
        S+DGMSNVFSPGELIGLLRAER  RALEEAICYR V LGIT+ASL+TQSFISEASFQETARVLAKAALRGRIDW                          
Subjt:  SQDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDW--------------------------

Query:  -----------------------------------LREMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIV
                                           L+EM+E GVHFGH TRKWNP+MAPYISAKRKGI+I NLTRTARFLSEACDLVFDAASR KQFLIV
Subjt:  -----------------------------------LREMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIV

Query:  GTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEY
        GTKNKAAD VARAA RARCHYVNKKWLGG+LTNWSTTE RL KFRDLR EQKTGG+NRLPK DAA LKRQL HLQTYLGGI+YMTGLPDIVIIVDQQEEY
Subjt:  GTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEY

Query:  RALQEC----------------------------------------------------------------------------------------SAIIAV
         ALQEC                                                                                        SAI+ V
Subjt:  RALQEC----------------------------------------------------------------------------------------SAIIAV

Query:  RNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGL
        RNPQT+PTDGQNFFEY+LEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNWSGALLPWK+I+LPHGELAAPTNDINTTVALALLTS+AYFYAGLSKKGL
Subjt:  RNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGL

Query:  SYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLELIMNPRISAASVIAAGL
         YFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVL  ++ P +    V+  GL
Subjt:  SYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLELIMNPRISAASVIAAGL

KAG6735380.1 hypothetical protein POTOM_061997 [Populus tomentosa]

0.0e+00

70.3

Show/hide

Query:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL
        I+CTG     YP I H NSDLLAKRR+N FII F+S+Q  EKEL   S I IEIPING+FRR+  SI AYFDDPQYRRKSSGITKY  IGV   +KKEDL
Subjt:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL

Query:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP
        +EYRGVK+F+PKY  QMKVDRFFFIPEEV+ILPESSS+MVRNNSIIGV T++TL+ +SRVGGL+R+E+KKK++ELKIFSGDIHFP   DKISR++GILIP
Subjt:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP

Query:  PERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR
        P  VK NSK+SKK KNWIYVQ ITPTKKK FV VRPV+IYE  DGINL  LFP DLLQE++NL+LR+VNYILYGNGKPI+GIS TSIQLVRTCL+LNW++
Subjt:  PERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR

Query:  DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYI-RKRKDPS-----------------------GATVHRHYGKILYEGDTLVTFIYEKSRSGD
        DKKSSSIEEA   FVEVS NGL+R+FLRI L KS  SYI RKR DPS                       GATVH HYG+ILYEGDTLVTFIYEKSRSGD
Subjt:  DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYI-RKRKDPS-----------------------GATVHRHYGKILYEGDTLVTFIYEKSRSGD

Query:  ITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSN
        ITQGLPKVEQVLEVRSIDSIS++LEKR+E WNE ITRI+GIPWGFLIGAELTIVQ                                      S+DGMSN
Subjt:  ITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSN

Query:  VFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME----AGVHFGHGTRKWNPRMAPYISAK
        VFSPGELIGLLRAER  RALEEAICYR V LGIT+ASL+TQSFISEASFQETARVLAKAALRGRIDWL+ + E     GVHFGH TRKWNP+MAPYISAK
Subjt:  VFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME----AGVHFGHGTRKWNPRMAPYISAK

Query:  RKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDA
        RKGI+I NLTRTARFLSEACDLVFDAASR KQFLIVGTKNKAAD VARAA RARCHYVNKKWLGG+LTNWSTTE RL KFRDLR EQKTGG++RLPK DA
Subjt:  RKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDA

Query:  AMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQECSAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNW
        A LKRQL HLQTYLGGI+YMTGLPDIVIIVDQQEEY ALQECSAI+ VRNPQT+PTD                                           
Subjt:  AMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQECSAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNW

Query:  SGALLPWKLIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLELIMNP
         GALLPWK+I+LPHGELAAPTNDINTTVALALLTS+AYFYAGLSKKGL YFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVL  ++ P
Subjt:  SGALLPWKLIQLPHGELAAPTNDINTTVALALLTSVAYFYAGLSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLELIMNP

Query:  RISAASVIAAGL-AVGLASIGPGVGQGTAAGQAVEG
         +    V+  GL   G+ ++          G+++EG
Subjt:  RISAASVIAAGL-AVGLASIGPGVGQGTAAGQAVEG

KAG8363203.1 hypothetical protein BUALT_BualtPtG0001100 [Buddleja alternifolia]

0.0e+00

66.63

Show/hide

Query:  FCHKPEFMSEGYLELARRLAQKFSILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQY
        F  K E     Y +L+R       I+CTG+ NL  P I + NSDL +KRRRN FII  +S+QERE EL PPS ISIEIPING+FRR+  SILAYFDDP+Y
Subjt:  FCHKPEFMSEGYLELARRLAQKFSILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQY

Query:  RRKSSGITKYGTI---GVLKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELK
        RRKSSGITKYGT+    ++KKEDLIEY+G K+F+PKY  QMKVDRFFFIPEEVHILP SSSIMVRNNSIIGV T++TL+IRSRVGGLVRVE+KKKRIELK
Subjt:  RRKSSGITKYGTI---GVLKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELK

Query:  IFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNG
        I SGDIHFPGE DKISRH+G+LIPP   K+NSK+SKKWKNWIYVQ ITP+KKKYFV VRPV+ YE+ DGINL TLFP DLLQERDN++LRVVNYILYGN 
Subjt:  IFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNG

Query:  KPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGATVHRHYGKILYEGDTLVTFIYEKSRSGD
                                                                              GATVH HYG+ILYEGDTL+TFIYEKSRSGD
Subjt:  KPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGATVHRHYGKILYEGDTLVTFIYEKSRSGD

Query:  ITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSN
        ITQGLPKVEQVLEVRSI+SISM+LEKR++GWNERIT+ILG+PW FLIGAELTIVQ                                      S+DGMSN
Subjt:  ITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSN

Query:  VFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR--------------------------EMMEA
        VFSPGELIGLLRAER GRALEEA+CYRA+LLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+                          EM+EA
Subjt:  VFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR--------------------------EMMEA

Query:  GVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLH
        GVHFGHGTRKWNP+MAPYISAKRKGI+I NLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVA AA +ARCH VNKKWLGGMLTNWSTTETRLH
Subjt:  GVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLH

Query:  KFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQE-------------------------------------
        KFRDLR EQKTG LNRLPKRDAAM+KRQL  LQTYLGGI+YMTGLPDIVIIVDQ EEY AL+E                                     
Subjt:  KFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQE-------------------------------------

Query:  ---------CSAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELAAPTNDINTTVALAL
                 CSA IAVRNPQT+PT GQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWK+I+LPHGELAAPTNDINTTVALAL
Subjt:  ---------CSAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELAAPTNDINTTVALAL

Query:  LTSVAYFYAGLSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLELIMNPRISAASVIAAGL-AVGLASIGPGVGQGTAAGQ
        LTSVAYFYAGL+KKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVL  ++ P +    V+  GL   G+ ++          G+
Subjt:  LTSVAYFYAGLSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLELIMNPRISAASVIAAGL-AVGLASIGPGVGQGTAAGQ

Query:  AVEG
        ++EG
Subjt:  AVEG

QCE13735.1 DNA-directed RNA polymerase subunit beta' [Vigna unguiculata]

0.0e+00

58.18

Show/hide

Query:  ILCTGQSNLTYPAIFHGNSD--LLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKE
        I+ TG  NL  P I H NSD  LL KRRRN FII F+S+QEREKEL P   ISIEIPING+FRR+  SILAYFDDPQYRRKSSGITKYGTIG   +LKKE
Subjt:  ILCTGQSNLTYPAIFHGNSD--LLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKE

Query:  DLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
        DLIEYRGVK+FKPKY  Q KVDRFFFIPEEVHILPESSSIMVRNNSIIG+ TR+TL+ RSRVGGLVR+E+KKKRIELKIFSGDIHFPGEMDKI RH+GIL
Subjt:  DLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL

Query:  IPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNW
        IPP  VKKNSK+SKK KNWIYVQWITPTKKKYFV VRPVIIYE+ADGINL TLFPQD L+ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNW
Subjt:  IPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNW

Query:  DRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-----------------------------------------------------
        D+DKK+SSIEEAR+SF+EVS NGL+++FLRI+LVKS TSYIRKR DP                                                     
Subjt:  DRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRS
                                                                                GATVH HYG+IL EGDT VTFIYEKSRS
Subjt:  -----------------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRS

Query:  GDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGM
        GDITQGLPKVEQVLEVRSIDSISM+LEKR+EGWNE ITRILGIPWGF+IGAELTIVQ                                      S+DGM
Subjt:  GDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGM

Query:  SNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR-----------------------------
        SNVFSPGELIGLLRAERTGRALEEAICYRA+LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWL+                             
Subjt:  SNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR-----------------------------

Query:  ---------EMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLG
                 EMMEAGVHFGHGTRKWNPRMAPYISAKRKGI+IINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAA +ARCHYVNKKWLG
Subjt:  ---------EMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLG

Query:  GMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQEC----------------------
        GMLTNW TTETRLHKFRDLRTEQKTG LNRLPKRDAA+LKRQL HLQTYLGGI+YMTGLPDIVIIVDQQEEY AL+EC                      
Subjt:  GMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQEC----------------------

Query:  ------------------------SAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELA
                                SAIIAVRNPQT+PTDGQNFFEYVLEFIRDVSKTQIGEEY                                     
Subjt:  ------------------------SAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELA

Query:  APTNDINTTVALALLTSVAYFYAGLSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVL------------------------
                         VAYFYAGL+KKGL YFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVL                        
Subjt:  APTNDINTTVALALLTSVAYFYAGLSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVL------------------------

Query:  -------------------ELIMNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
                           E++MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
Subjt:  -------------------ELIMNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR

TrEMBL top hits

e value

%identity

Alignment

A0A3Q7XSM6 DNA-directed RNA polymerase

1.9e-276

57.19

Show/hide

Query:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL
        I+CT  S+L Y AIF+    LLAKRRRN F+I F+ +QE++ +L  PS +SIEIPING+F R+  SILAYFDDPQYRR++SGITKY TIG+    +KEDL
Subjt:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL

Query:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP
        IEYRG+K+ KPKY  Q KVDRFFFIPEEVHILPESSSIM+RNNS++G+ T +TL+IRSRVGGLVR+EKKKK+IELKIFSG+IHFPGEMDKISRH+ ILIP
Subjt:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP

Query:  PERVKKNSKK-SKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWD
        P  VKK  +K +KK  NWIYVQWI  TKKKYFV VRPVI+YE+ D I+ V LFPQDL QERDNLELRV+NYILYGNGK IRGIS T IQLVRTCL+LNWD
Subjt:  PERVKKNSKK-SKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWD

Query:  RDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPS-----------------------------------------------------
        + KKSSSIEEA ASFVEVSTNGL+  F+RIDLVKS  SYIRKR DPS                                                     
Subjt:  RDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPS-----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------GATVHRHYGKILYEGDTLVTFIYEKSRSGDI
                                                                             GAT+H HYG+IL EGD LVTFIYEKSRSGDI
Subjt:  ---------------------------------------------------------------------GATVHRHYGKILYEGDTLVTFIYEKSRSGDI

Query:  TQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNV
        TQGLPKVEQ+LE+RSIDSISM+LEKRI+ WNE I RILGIPWGFLIGAELTI Q                                      S+DGMSNV
Subjt:  TQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNV

Query:  FSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR-----------------------EMMEAGVHF
        F PGELIGLLRAERTGRALEEAICYRA+LLGITK SLNTQSFISEASFQETARVLAKAALRGRIDWL+                       +MMEAGVHF
Subjt:  FSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR-----------------------EMMEAGVHF

Query:  GHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD
        GH TRKWNPRMAPYISAKRKGI+IINLTRTARFLSEACDLVFDAASRGKQFLIVGTK KAADSV RAA RARCHYVNKKWLGGMLTNW TTETRL KFRD
Subjt:  GHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRD

Query:  LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQEC
        LRTEQKTG  N LPKRDAAMLKRQLSHL+TYLGGI+YMT LPDIVIIVDQQE+Y AL+EC
Subjt:  LRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQEC

A0A4D6NNC8 Multifunctional fusion protein

0.0e+00

58.18

Show/hide

Query:  ILCTGQSNLTYPAIFHGNSD--LLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKE
        I+ TG  NL  P I H NSD  LL KRRRN FII F+S+QEREKEL P   ISIEIPING+FRR+  SILAYFDDPQYRRKSSGITKYGTIG   +LKKE
Subjt:  ILCTGQSNLTYPAIFHGNSD--LLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKE

Query:  DLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
        DLIEYRGVK+FKPKY  Q KVDRFFFIPEEVHILPESSSIMVRNNSIIG+ TR+TL+ RSRVGGLVR+E+KKKRIELKIFSGDIHFPGEMDKI RH+GIL
Subjt:  DLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL

Query:  IPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNW
        IPP  VKKNSK+SKK KNWIYVQWITPTKKKYFV VRPVIIYE+ADGINL TLFPQD L+ERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNW
Subjt:  IPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNW

Query:  DRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-----------------------------------------------------
        D+DKK+SSIEEAR+SF+EVS NGL+++FLRI+LVKS TSYIRKR DP                                                     
Subjt:  DRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRS
                                                                                GATVH HYG+IL EGDT VTFIYEKSRS
Subjt:  -----------------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRS

Query:  GDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGM
        GDITQGLPKVEQVLEVRSIDSISM+LEKR+EGWNE ITRILGIPWGF+IGAELTIVQ                                      S+DGM
Subjt:  GDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGM

Query:  SNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR-----------------------------
        SNVFSPGELIGLLRAERTGRALEEAICYRA+LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWL+                             
Subjt:  SNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR-----------------------------

Query:  ---------EMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLG
                 EMMEAGVHFGHGTRKWNPRMAPYISAKRKGI+IINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAA +ARCHYVNKKWLG
Subjt:  ---------EMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLG

Query:  GMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQEC----------------------
        GMLTNW TTETRLHKFRDLRTEQKTG LNRLPKRDAA+LKRQL HLQTYLGGI+YMTGLPDIVIIVDQQEEY AL+EC                      
Subjt:  GMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQEC----------------------

Query:  ------------------------SAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELA
                                SAIIAVRNPQT+PTDGQNFFEYVLEFIRDVSKTQIGEEY                                     
Subjt:  ------------------------SAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELA

Query:  APTNDINTTVALALLTSVAYFYAGLSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVL------------------------
                         VAYFYAGL+KKGL YFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVL                        
Subjt:  APTNDINTTVALALLTSVAYFYAGLSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVL------------------------

Query:  -------------------ELIMNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
                           E++MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR
Subjt:  -------------------ELIMNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR

A0A6H0EPT4 DNA-directed RNA polymerase subunit beta''

7.9e-246

64.25

Show/hide

Query:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL
        ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPS ISIEIPING+FRR+  SILAYFDDPQYRR SSGITKYGTIGV   LKKEDL
Subjt:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL

Query:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP
        IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP
Subjt:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP

Query:  PERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR
        PERVKKNSKKSKK KNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR
Subjt:  PERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR

Query:  DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-------------------------------------------------------
        DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP                                                       
Subjt:  DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDI
                                                                            SGATVHRHYG+ILYEGDTLVTFIYEKSRSGDI
Subjt:  --------------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDI

Query:  TQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNV
        TQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ                                      S+DGMSNV
Subjt:  TQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNV

Query:  FSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME
        FSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR + E
Subjt:  FSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME

A0A6H0ER20 DNA-directed RNA polymerase subunit beta''

7.9e-246

64.25

Show/hide

Query:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL
        ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPS ISIEIPING+FRR+  SILAYFDDPQYRR SSGITKYGTIGV   LKKEDL
Subjt:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL

Query:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP
        IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP
Subjt:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP

Query:  PERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR
        PERVKKNSKKSKK KNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR
Subjt:  PERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR

Query:  DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-------------------------------------------------------
        DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP                                                       
Subjt:  DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDI
                                                                            SGATVHRHYG+ILYEGDTLVTFIYEKSRSGDI
Subjt:  --------------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDI

Query:  TQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNV
        TQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ                                      S+DGMSNV
Subjt:  TQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNV

Query:  FSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME
        FSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR + E
Subjt:  FSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME

W1P3W4 DNA-directed RNA polymerase

2.4e-295

51.67

Show/hide

Query:  NLTYPAIFHGNSD--LLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKEDLIEYRG
        NL +P+I H N D  LLAKRRRN FII F+ +QERE EL   SSISIEIPING+FR++  SILAYFDDPQYRRKSSGITKYG IG   + KKEDLIEY G
Subjt:  NLTYPAIFHGNSD--LLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKEDLIEYRG

Query:  VKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPPERVK
        +K+ KPKYQ      ++++     H   +  S                     R+G      +KKKRIELKIFSG+I FP EMDKI RH+GILIPP RVK
Subjt:  VKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPPERVK

Query:  KNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSS
        K  K+SKK KNWIYVQWITPTKKKYFV VRPVIIYE+ADGINL TLFPQDLLQE+DNLELRVVNYILYGNGKPI GISGTSIQLVRTCL+LNWD+D KSS
Subjt:  KNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSS

Query:  SIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP------------------------------------------------------------
        S EEA   FVEVST GL+R+FLRI+L KS+  YIRKR DP                                                            
Subjt:  SIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGLPKVE
                                                                     GATVH HYG+ L EGDTLVTFIYEKSRSGDITQGLPKVE
Subjt:  ------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGLPKVE

Query:  QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNVFSPGELIG
        QVLEVRSIDSISM+LEKR+EGWN+ +TRILGIPWGFLIGAELTIVQ                                      S+DGMSNVF PGELIG
Subjt:  QVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNVFSPGELIG

Query:  LLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR----------------------------------------
        LLRAERTGRALEEAICYRA+LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWL+                                        
Subjt:  LLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR----------------------------------------

Query:  ------------------------------------------------------EMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEA
                                                              EMMEAGVHFGHGT+KWNPRMAPYISAKRKGI+IINLTRTARFLSEA
Subjt:  ------------------------------------------------------EMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEA

Query:  CDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQY
        CDLVFDAASRGKQFLIVGTKNKAADSVA AA +ARCHYVNKKWLGGMLTNW TTETRLHKFRDLRTEQKTG LNRLPKRDAA+LKRQLSHLQTYLGGI+Y
Subjt:  CDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQY

Query:  MTGLPDIVIIVDQQEEYRALQEC-----------------------------------------------------------------------------
        MTGLPDIVIIVDQQEEY AL+EC                                                                             
Subjt:  MTGLPDIVIIVDQQEEYRALQEC-----------------------------------------------------------------------------

Query:  --------SAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELAAPTNDINTTVALALLT
                SAI+AVRNPQT+PTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNWSGALLPWK+I+LPHGELAAPTNDINTTVALALLT
Subjt:  --------SAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELAAPTNDINTTVALALLT

SwissProt top hits

e value

%identity

Alignment

B1A925 DNA-directed RNA polymerase subunit beta''

6.5e-205

51.67

Show/hide

Query:  SLCRDHESAAIEGVVPEPAGRITFVILDLEGRDRALDTRPTGIGFCHKPEFMSEGYLELARRLAQKFSILCTGQSNLTYPAIFHGNSDLLAKRRRNGFII
        SL +D +   I  +  E     +  + + +GR +   +  +    C  P+     Y E  R       IL TG  NL Y A  H NSDLLAKRRRN FII
Subjt:  SLCRDHESAAIEGVVPEPAGRITFVILDLEGRDRALDTRPTGIGFCHKPEFMSEGYLELARRLAQKFSILCTGQSNLTYPAIFHGNSDLLAKRRRNGFII

Query:  QFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHIL
         F+S+QE+EKEL P S ISIEIPING+FRR+  SILA+FDDP+YRRKSSGI KYGTIG   ++KKED+IEYRGVK FK KY  QMKVDRFFFIPEEVHIL
Subjt:  QFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHIL

Query:  PESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFV
        PESSSIMVRNNSIIGV TR+TL+IRS+VGGLVRVE+KKK IEL+IFSGDIHFPG+ DKISRH+GILIPP R K NSK+SKK KNWIYVQ ITPTKKKYFV
Subjt:  PESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFV

Query:  FVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLV
         VRPV  YE+ADGINL TLFPQDL +E+DN++LRVVNYILYGNGKP+RGI  TSIQLVRTCL+LNWD+D KSSS+EE R  FVEVSTN L+R+FLRIDLV
Subjt:  FVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLV

Query:  KSDT--SYIRKRKDPS------------------------------------------------------------------------------------
        KS +  SYIRKR DPS                                                                                    
Subjt:  KSDT--SYIRKRKDPS------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------GATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERI
                                           GATVH HYG+ILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWN+RI
Subjt:  -----------------------------------GATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERI

Query:  TRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK
        TRILGIPWGFLIGAELTIVQ                                      S++GMSNVF PGELIGLLRAERTGRALEEAICYRA+LLGIT+
Subjt:  TRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITK

Query:  ASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME
        ASLNTQSFISEASFQETARVLAKAALRGRIDWL+ + E
Subjt:  ASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME

B1NWE0 DNA-directed RNA polymerase subunit beta''

4.2e-204

53.64

Show/hide

Query:  FCHKPEFMSEGYLELARRLAQKFSILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQY
        F  K E     Y EL R        +CTG  NL Y  I + NSDLLAKRRRN FII F+S+QEREKEL   S+ISIEIPING+FRR+  S+ AYFDDPQY
Subjt:  FCHKPEFMSEGYLELARRLAQKFSILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQY

Query:  RRKSSGITKYGTIGV---LKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELK
        R+KSSGITKYG IGV   +KKEDLIEYRGVK+FKPKY  Q KVDRFFFIPEEV+ILPESSS+MVRNNSIIGV T++ L+ RSRVGGLVRVE+KKK++ELK
Subjt:  RRKSSGITKYGTIGV---LKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELK

Query:  IFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNG
        IFSGDIHFPGE DKISRH+ ILIPP  VK NSK+SKK KNWIY+Q ITPTKKKYFV VRPVIIYE+A+GINL TLFPQDLLQE+DNL+LRVVNYILYG G
Subjt:  IFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNG

Query:  KPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYI-RKRKDPS-----------------------------
        KPIRGIS TSIQLVRTCL+LNWD+DKKSSSIEEARA+FVE+STNGL+R+FLRI+LVK   SYI RKR DPS                             
Subjt:  KPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYI-RKRKDPS-----------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------GATVHRH
                                                                                                     GATVH H
Subjt:  ---------------------------------------------------------------------------------------------GATVHRH

Query:  YGKILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ----------------------
        YG+ILYEG+TLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE ITRILGIPWGFLIG ELTIVQ                      
Subjt:  YGKILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ----------------------

Query:  ----------------SQDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME
                        S+DGMSNVFSPGELIGLLRAERTGRALEEAICY A+LLGIT+ASLNTQSFISEASFQET RVLAKAALRGRIDWL+ + E
Subjt:  ----------------SQDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME

Q09X27 DNA-directed RNA polymerase subunit beta''

1.8e-202

55.41

Show/hide

Query:  ILCTGQSNLTYPAIFHGNSD--LLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKE
        IL T  SNL +P+I H +SD  LLAKRRRN FII F+ +QEREKEL P SSISIEIPING+FR++  SILAYFDD QYRRK SGITKYG IG   +LKKE
Subjt:  ILCTGQSNLTYPAIFHGNSD--LLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIG---VLKKE

Query:  DLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
        DLIEY GVK+FKPKY  Q KVD+FFFIPEEVHILPES SIMVRNNSIIGV TR+TL+ RSRVGGLVRVEKK KRIELKIFSGDIHFP EMDKI RH+GIL
Subjt:  DLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL

Query:  IPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNW
        IPP RVKK  K+SKKWKNWIYVQ ITPTKKKYFV VRPVIIYE+ADGINL TLFPQD LQE+DNLELRVVNYILYGNGKPI GISGT IQLVRTCL+LNW
Subjt:  IPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNW

Query:  DRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-----------------------------------------------------
        D+  KSSS EE  ASFVEVST  L+R+FLRI+LVKS  SYIRKR DP                                                     
Subjt:  DRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-----------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGLP
                                                                        GATVH HYG+IL EGDTLVTFIYEKSRSGDITQGLP
Subjt:  ---------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGLP

Query:  KVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNVFSPGE
        KVEQVLEVRSIDSISM+LEKR+EGWNERITRILGIPWGFLIGAELTIVQ                                      S+DGMSNVF PGE
Subjt:  KVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNVFSPGE

Query:  LIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME
        LIGL RAERTGRAL+EAICY+A+LLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWL+ + E
Subjt:  LIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME

Q4VZP3 DNA-directed RNA polymerase subunit beta''

5.4e-244

63.26

Show/hide

Query:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL
        ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEL PPS ISIEIPING+FRR+  SILA+FDDPQYRR SSGITKYGTIGV   LKKEDL
Subjt:  ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTIGV---LKKEDL

Query:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP
        IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP
Subjt:  IEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIP

Query:  PERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR
        PERVKKNSKKSKK KNWIYVQWITPTKKKYFVFVRPVIIYELADGINLV LFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLNWDR
Subjt:  PERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDR

Query:  DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-------------------------------------------------------
        DKKSSSIE+ARASFVEVSTNGLVRNFLRIDL KSDT+YIRKRKDP                                                       
Subjt:  DKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDP-------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGD
                                                                             SGATVHRHYG+ILYEGDTLVTFIYEKSRSGD
Subjt:  ---------------------------------------------------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGD

Query:  ITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSN
        ITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ                                      S+DGMSN
Subjt:  ITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSN

Query:  VFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME
        VFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLR + E
Subjt:  VFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME

Q8S8Y1 DNA-directed RNA polymerase subunit beta''

3.9e-202

52.96

Show/hide

Query:  GFCHKPEFMSEGYLELARRLAQKFSILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQ
        GF  K E     Y +L R       I+CTGQ NL Y  I H NSDLL+KRRRN FII   S+QE E EL P S ISIEIP+NG+FRR+  SILAYFDDP+
Subjt:  GFCHKPEFMSEGYLELARRLAQKFSILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQ

Query:  YRRKSSGITKYGTI---GVLKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIEL
        YRRKSSGI KYGTI    V+KKEDLIEYRGVK+F+PKY  QMKVDRFFFIPEEVHILP SSSIMVRNNSI+GV T++TL++RSRVGGLVRVE+KKKRIEL
Subjt:  YRRKSSGITKYGTI---GVLKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIEL

Query:  KIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGN
        KIFSGDIHFPGE DKISRH G+LIPP   K NSK+SKK K WIYVQ ITP+KKK+FV VRPV+ YE+ DGIN  TLFP D LQERDN++LR+VNYILYGN
Subjt:  KIFSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGN

Query:  GKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPS-----------------------------
        GKPIRGIS TSIQLVRTCL+LNW++DKKSSS EEARASFVE+ TNGL+R+FLRI+LVKS  SYI KR DPS                             
Subjt:  GKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPS-----------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  --------------------------------------------------------------------------------------------GATVHRHY
                                                                                                    GATVH HY
Subjt:  --------------------------------------------------------------------------------------------GATVHRHY

Query:  GKILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ-----------------------
        G+ LYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM+LEKR+EGWN+ ITRILGIPWGFLIGAELTI Q                       
Subjt:  GKILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ-----------------------

Query:  ---------------SQDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME
                       S+DGMSNVFSPGELIGLLRAER GRALEEAICYR VLLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+ + E
Subjt:  ---------------SQDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME

Arabidopsis top hits

e value

%identity

Alignment

ATCG00140.1 ATP synthase subunit C family protein

1.4e-32

97.53

Show/hide

Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
        MNP +SAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

ATCG00150.1 ATPase, F0 complex, subunit A protein

2.4e-77

77.32

Show/hide

Query:  SAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELAAPTNDINTTVALALLTSVAYFYAG
        SA++A+RNPQT+PTDGQNFFE+VLEFIRDVSKTQIGEEYGPWVPFIGT+FLFIFVSNWSGALLPWK+IQLP GELAAPTNDINTTVALALLTSVAYFYAG
Subjt:  SAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPHGELAAPTNDINTTVALALLTSVAYFYAG

Query:  LSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLELIMNPRISAASVIAAGL-AVGLASIGPGVGQGTAAGQAVEG
        LSKKGL YF KYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVL  ++ P +    V+  GL   G+ ++          G+++EG
Subjt:  LSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLELIMNPRISAASVIAAGL-AVGLASIGPGVGQGTAAGQAVEG

ATCG00160.1 ribosomal protein S2

2.1e-86

90.64

Show/hide

Query:  LREMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWS
        L EMM AGVHFGHGTRKWNPRMAPYISAKRKGI+IINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAAD V+RAA RARCHYVNKKWLGGMLTNWS
Subjt:  LREMMEAGVHFGHGTRKWNPRMAPYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWS

Query:  TTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQEC
        TTE RLHKFRDLRTEQKT G NRLPKRDAA+LKRQLS L+TYLGGI+YMTGLPDIVII+DQQEEY AL+EC
Subjt:  TTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQEC

ATCG00170.1 DNA-directed RNA polymerase family protein

7.6e-193

52.34

Show/hide

Query:  LCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTI---GVLKKEDLI
        L T   NL Y AIFH NSDLLAKRRRN F+I F+S+QE+EKE  P S IS+EIPING+FRR+  SI A+FDDP+YRRKSSGI KYGT+    +++KED+I
Subjt:  LCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITKYGTI---GVLKKEDLI

Query:  EYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPP
        EYRGV+  K KY  +MKVDRFFFIPEEVHILPESS+IMV+N SIIGV TRLTL+IRS+VGGL+RVEKKKKRIELKIFSGDIHFP + DKISRH+GILIPP
Subjt:  EYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGILIPP

Query:  ERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRD
         R KKNSK+SKK+KNWIYVQ ITPTKKK+FV VRPV  YE+AD INL TLFPQDL +E+DN++LRV NYILYGNGKP RGIS TSIQLVRTCL+LNWD  
Subjt:  ERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRD

Query:  KKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKR-----------------------------------------------------------
         K+SS+EE RA FVEVST GL+++F+RI LVKS  SYIRKR                                                           
Subjt:  KKSSSIEEARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKR-----------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------KDP--------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGL
                                           K+P                           GA VH HY +ILYEGDTLVTFIYEKSRSGDITQGL
Subjt:  -----------------------------------KDP--------------------------SGATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGL

Query:  PKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNVFSPG
        PKVEQVLEVRSIDSIS++LEKRI+GWN+ ITRILGIPWGFLIGAELTIVQ                                      S++GMSNVF PG
Subjt:  PKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ--------------------------------------SQDGMSNVFSPG

Query:  ELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME
        ELIGLLRAERTGRALEEAICYRAVLLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+ + E
Subjt:  ELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMME

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATGAATCTCTATCAGACGATTCTCTTTCTTCGAATGAAGGTCTTAGAGATGGAACCGAAGCTTCTATAGTAGCAGGAGCTACAAGTAATGAAATAGCATCTGCCAA
TTCATTAATCACTAAACAGGAGATGGTTCTTTTCCTCCGAGTGAAGTGCTTTTCATACTATGATTTGTCAACAGTGGAATTAGCGTATTATAGTAGTTGCAGTGATAAAA
GAAGAAAGGAAGCCGCTAGGCGCGAATGCTTTCTTTCTATGAAATCCTGTTGCTATGGCTCACGAAGAGCAACGGGACAGTCACAGGCTGGCTTAAGAATCACTAACCTC
CGACTCCCTAAACTTGGTGGGTGTGCCTGCTTCTTCCGACCTCTATCCAAACAAATCATCGAGGAAGTCAGGTCAAAAGAAAGAGTAGCACTAGCTGAGAAGACCGAGAA
GACGGACTTGCTGGTATCGTCAAATAGAGTATCAAAGGCTTATTCCGCTCTATTGGCAGTTGTTCACGACTCAGCTGCTAGCCTTTCGAAATCTCTTTGTCGAGATCACG
AATCAGCAGCTATAGAAGGAGTTGTTCCAGAACCCGCAGGCAGAATAACCTTTGTTATACTTGACCTCGAAGGCAGGGATAGGGCTTTGGATACGAGACCTACAGGGATA
GGGTTTTGCCATAAACCGGAGTTTATGAGTGAAGGCTACTTAGAACTGGCGAGAAGGTTGGCACAAAAGTTTTCAATCCTATGTACGGGTCAATCTAATCTCACATATCC
TGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACCACCCCCTTCCA
GTATTTCGATTGAAATACCCATAAATGGTCTTTTTCGTAGAAGTAGAAAGAGTATTCTTGCTTATTTCGATGATCCTCAATACAGAAGAAAGAGTTCGGGAATTACTAAA
TATGGGACTATAGGGGTCCTAAAAAAAGAGGATTTGATTGAGTATCGAGGCGTCAAAGACTTTAAGCCAAAATACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCAT
TCCCGAGGAAGTGCATATTTTACCTGAATCTTCTTCCATAATGGTACGGAACAACAGTATCATTGGAGTAGCTACACGACTAACTTTAAGTATAAGAAGCCGAGTAGGCG
GATTGGTCCGAGTGGAGAAAAAAAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCCTGGAGAGATGGATAAGATATCCCGACACAATGGCATCTTG
ATACCACCTGAAAGAGTAAAAAAAAATTCTAAGAAATCCAAAAAATGGAAAAATTGGATTTATGTCCAGTGGATCACACCTACCAAGAAAAAGTATTTTGTTTTTGTTCG
ACCTGTAATCATATATGAACTAGCCGACGGTATAAATTTAGTAACACTTTTCCCACAGGATCTATTGCAAGAAAGGGATAATCTGGAGCTTAGAGTTGTCAATTATATCC
TTTATGGAAATGGCAAACCAATTCGGGGAATTTCTGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCGATCGAA
GAAGCCCGCGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTCCTCCGAATAGACTTAGTGAAATCCGATACTTCTTATATCAGAAAAAGGAAAGATCC
GTCAGGAGCAACTGTTCATCGCCATTATGGAAAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTC
CAAAAGTGGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCT
TGGGGATTTTTGATTGGTGCTGAACTAACTATAGTGCAAAGTCAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTAATTGGATTGTTGCGAGCGGAACGAACAGG
GCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTC
GAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCA
CCTTATATCTCTGCAAAACGTAAAGGTATTAATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGAAA
ACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGTATGTTAA
CAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTAAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGAGATGCCGCTATGTTGAAG
AGACAATTATCTCACTTGCAAACATATCTGGGCGGGATTCAATATATGACAGGGTTACCCGATATTGTAATAATCGTCGATCAGCAAGAAGAATATCGGGCTCTTCAAGA
ATGTTCAGCCATTATAGCTGTTCGTAATCCACAAACCGTTCCTACTGACGGTCAGAATTTCTTCGAATATGTCCTTGAATTCATTCGAGACGTGAGCAAAACTCAGATTG
GCGAAGAATATGGTCCATGGGTTCCCTTTATTGGAACTATGTTTCTATTTATTTTTGTTTCGAATTGGTCAGGGGCTCTTTTACCTTGGAAACTCATACAGTTACCTCAC
GGAGAGTTAGCCGCACCCACAAATGATATAAATACTACTGTTGCTTTAGCTTTACTCACATCAGTAGCATATTTCTATGCGGGTCTTAGCAAAAAAGGATTAAGTTATTT
CGGTAAATACATTCAACCAACTCCAATCCTTTTACCCATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCTGATG
AATTAGTAGTTGTTGTTCTTGAACTTATCATGAATCCACGGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTTGGGCTTGCTTCTATTGGACCTGGGGTTGGT
CAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGCTTAGTTTGGCTTTTATGGAAGCTTTAAC
AATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNESLSDDSLSSNEGLRDGTEASIVAGATSNEIASANSLITKQEMVLFLRVKCFSYYDLSTVELAYYSSCSDKRRKEAARRECFLSMKSCCYGSRRATGQSQAGLRITNL
RLPKLGGCACFFRPLSKQIIEEVRSKERVALAEKTEKTDLLVSSNRVSKAYSALLAVVHDSAASLSKSLCRDHESAAIEGVVPEPAGRITFVILDLEGRDRALDTRPTGI
GFCHKPEFMSEGYLELARRLAQKFSILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELPPPSSISIEIPINGLFRRSRKSILAYFDDPQYRRKSSGITK
YGTIGVLKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFSGDIHFPGEMDKISRHNGIL
IPPERVKKNSKKSKKWKNWIYVQWITPTKKKYFVFVRPVIIYELADGINLVTLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWDRDKKSSSIE
EARASFVEVSTNGLVRNFLRIDLVKSDTSYIRKRKDPSGATVHRHYGKILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIP
WGFLIGAELTIVQSQDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLREMMEAGVHFGHGTRKWNPRMA
PYISAKRKGINIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLK
RQLSHLQTYLGGIQYMTGLPDIVIIVDQQEEYRALQECSAIIAVRNPQTVPTDGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKLIQLPH
GELAAPTNDINTTVALALLTSVAYFYAGLSKKGLSYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLELIMNPRISAASVIAAGLAVGLASIGPGVG
QGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV

Spg037761 (gene) of Sponge gourd (cylindrica) v1 genome