CuGenDBv2

Gene ID	Spg037767
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Photosystem II protein D1
Genome location	scaffold27:100075..101444
RNA-Seq Expression	Spg037767
Synteny	Spg037767
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ACN49388.1 photosystem II protein D1 [Nelumbo nucifera]

6.0e-27

93.75

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYT
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ ++
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYT

CUR07599.1 psbA [Acacia tysonii]

7.8e-27

95.24

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ +
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY

RYR49286.1 hypothetical protein Ahy_A07g035707 [Arachis hypogaea]

1.2e-27

94.03

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYTSDL
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIL Y   L
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYTSDL

YP_004563847.1 photosystem II protein D1 [Nelumbo lutea]

6.0e-27

93.75

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYT
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ ++
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYT

YP_009256819.1 D1 reaction center protein of photosystem II [Closterium baillyanum]

4.6e-27

93.65

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY
        PPVDIDGIREPVSGSLLYGNNIISGAI+PTSAAIG+HFYPIWEAASVDEWLYNGGPYELI+F+
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY

TrEMBL top hits

e value

%identity

Alignment

A0A191T5U5 Photosystem II protein D1

2.2e-27

93.65

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY
        PPVDIDGIREPVSGSLLYGNNIISGAI+PTSAAIG+HFYPIWEAASVDEWLYNGGPYELI+F+
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY

A0A1D0CBZ2 Photosystem II protein D1

3.8e-27

95.24

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ +
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY

A0A445CEA9 Uncharacterized protein

5.9e-28

94.03

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYTSDL
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIL Y   L
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYTSDL

F6GPP3 Photosystem II protein D1

2.9e-27

93.75

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYT
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ ++
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYT

F6GPX8 Photosystem II protein D1

2.9e-27

93.75

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYT
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ ++
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYT

SwissProt top hits

e value

%identity

Alignment

A1E9Y8 Photosystem II protein D1

1.3e-29

95.24

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ +
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY

A4QJ96 Photosystem II protein D1

1.3e-29

95.24

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ +
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY

A4QJI0 Photosystem II protein D1

1.3e-29

95.24

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ +
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY

Q3V554 Photosystem II protein D1

1.3e-29

95.24

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ +
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY

Q85C23 Photosystem II protein D1

1.3e-29

95.24

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ +
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

9.5e-31

95.24

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Query:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY
        PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI+ +
Subjt:  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFY

Sequences

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CDS sequence

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ATGAAAATTCGAGCGTTGACGTATTTTCCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCAT
TATCCCTACTTCTGCAGCTATCGGGTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTTTGTTCTACA
CTTCTGACTTGGTGTAG

mRNA sequence

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Protein sequence

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MKIRALTYFPPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYTSDLV

Spg037767 (gene) of Sponge gourd (cylindrica) v1 genome