CuGenDBv2

Gene ID	Spg037771
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Photosystem II protein D1
Genome location	scaffold27:99565..100030
RNA-Seq Expression	Spg037771
Synteny	Spg037771
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAD3068813.1 hypothetical protein E3N88_36693 [Mikania micrantha]

1.9e-52

77.7

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA     L+ +                      AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEE+ NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

OTF84607.1 putative photosynthetic reaction centre, L/M [Helianthus annuus]

1.8e-55

89.31

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKE-AFLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYF
        MRPWIAVAYS PVAAATA      + + +FL AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYF
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKE-AFLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYF

Query:  GRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        GRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  GRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

QCE14262.1 photosystem II reaction center D1 protein [Vigna unguiculata]

1.9e-52

77.7

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA  F   + +   +                  AEHNILMHPFHMLGVAGVFGGSLFS MHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

QMV49325.1 maturase K [Prunus armeniaca]

1.5e-52

78.38

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA      + +                    L AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

YP_009869173.1 photosystem II protein D1 [Allium macranthum]

1.9e-52

78.77

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT----------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG
        MRPWIAVAYS PVAAATA      + +   +                AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT----------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG

Query:  QEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        QEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  QEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

TrEMBL top hits

e value

%identity

Alignment

A0A1Y3BWW6 32 kDa thylakoid membrane protein

8.9e-56

89.31

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKE-AFLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYF
        MRPWIAVAYS PVAAATA      + + +FL AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYF
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKE-AFLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYF

Query:  GRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        GRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  GRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

A0A5N6M758 Uncharacterized protein

9.2e-53

77.7

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA     L+ +                      AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEE+ NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

A0A6B9VXS0 Photosystem II protein D1

9.2e-53

78.77

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT----------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG
        MRPWIAVAYS PVAAATA      + +   +                AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT----------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG

Query:  QEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        QEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  QEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

A0A7G5CJ73 Photosystem II protein D1

7.1e-53

78.38

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA      + +                    L AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

M0ZYJ3 32 kDa thylakoid membrane protein

3.2e-53

81.94

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Query:  MRPWIAVAYSVPVAAATA---------RRFSQLVKEAF-----LTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQE
        MRPWIAVAYS PVAAATA           FS      F       AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQE
Subjt:  MRPWIAVAYSVPVAAATA---------RRFSQLVKEAF-----LTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQE

Query:  EETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        EET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  EETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

SwissProt top hits

e value

%identity

Alignment

A4QJI0 Photosystem II protein D1

4.3e-55

77.7

Show/hide

Query:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

A4QJZ9 Photosystem II protein D1

4.3e-55

77.7

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

P83755 Photosystem II protein D1

4.3e-55

77.7

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

Q3V554 Photosystem II protein D1

4.3e-55

77.7

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

Q7FNT3 Photosystem II protein D1

4.3e-55

77.7

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Query:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

3.0e-56

77.7

Show/hide

Query:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
        FGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

ATCG00270.1 photosystem II reaction center protein D

3.0e-11

29.73

Show/hide

Query:  MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR
        +RP+ A+A+S P+A   +      + ++                  F    HN  ++PFHM+GVAGV G +L  A+HG+ V ++L  E  +  +    + 
Subjt:  MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYR

Query:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT
          Q EET ++V A+ ++ ++     +F+N R LHFF+   PV G+W +
Subjt:  FGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFT

Sequences

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CDS sequence

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ATGCGTCCTTGGATTGCTGTTGCATATTCAGTTCCTGTTGCAGCTGCTACTGCTCGACGATTCTCCCAATTGGTCAAGGAAGCTTTTCTGACGGCTGAGCACAACATCCT
TATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA
ATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTGATAATATCGTAGCAGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAAC
AACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGTAGCACTATGGCTTTCAGGTTGA

mRNA sequence

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Protein sequence

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MRPWIAVAYSVPVAAATARRFSQLVKEAFLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRLIFQYASFN
NSRSLHFFLAAWPVVGIWFTVALWLSG

Spg037771 (gene) of Sponge gourd (cylindrica) v1 genome