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Spg037833 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037833
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationscaffold12:41939278..41943104
RNA-Seq ExpressionSpg037833
SyntenySpg037833
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR040197 - Zinc finger HIT domain-containing protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045392.1 uncharacterized protein E6C27_scaffold422G00030 [Cucumis melo var. makuwa]1.5e-5080.29Show/hide
Query:  KPSR-RTV--RQAFETKRFNILWVLDNVRSAMKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNAL
        +P+R RT+    +F  K+F ILW+L NVRSAMKHHPNTNAPYALHLKVPC +KPVS  DQSTAPNG  VDRPICVGDQNEVLEKSQLEAIASSSEIHN L
Subjt:  KPSR-RTV--RQAFETKRFNILWVLDNVRSAMKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNAL

Query:  NDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK
        NDE LRK I  IDSS DPETELDKAMEDEAFRIFSSK
Subjt:  NDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK

TYK11348.1 uncharacterized protein E5676_scaffold807G00230 [Cucumis melo var. makuwa]3.7e-4475.18Show/hide
Query:  KPSR-RTV--RQAFETKRFNILWVLDNVRSAMKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNAL
        +P+R RT+    +F  K+F ILW+L NVRSAMKHHPNTNAPYALHLKVPC +KPVS  DQS        +RPICVGDQNEVLEKSQLEAIASSSEIHN L
Subjt:  KPSR-RTV--RQAFETKRFNILWVLDNVRSAMKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNAL

Query:  NDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK
        NDE LRK I  IDSS DPETELDKAMEDEAFRIFSSK
Subjt:  NDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK

XP_008464781.1 PREDICTED: uncharacterized protein LOC103502587 isoform X2 [Cucumis melo]5.3e-4384.68Show/hide
Query:  MKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAF
        MKHHPNTNAPYALHLKVPC +KPVS  DQSTAPNG  VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE LRK I  IDSS DPETELDKAMEDEAF
Subjt:  MKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAF

Query:  RIFSSKVLLLV
        RIFSSK+  ++
Subjt:  RIFSSKVLLLV

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]1.6e-3482.47Show/hide
Query:  HLKVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLV
        H +VPCVKPVSAGDQSTAPNG LVDRPICV DQ+EVLEKSQLEAIASSSEI N LNDESL+KLI  I SSPDPETELD+AMEDEAFRIFSSK+  ++
Subjt:  HLKVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLV

XP_031743376.1 uncharacterized protein LOC101208978 isoform X6 [Cucumis sativus]1.7e-3655.88Show/hide
Query:  MKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAF
        MKHHPNTNAPYALHLKVPC +KPVS GDQSTA NG  VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE L+K I  IDSSPDPET +         
Subjt:  MKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAF

Query:  RIFSSKVLLLVKVLSNIYVRLTYDAVVTSMSDKLFRLFQVFILSLLVRYRPSSTPSPDGHRWRRENLFHV
                                        KL+++ + F  S + RY PSST  P+ HRWRRE   +V
Subjt:  RIFSSKVLLLVKVLSNIYVRLTYDAVVTSMSDKLFRLFQVFILSLLVRYRPSSTPSPDGHRWRRENLFHV

TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein1.9e-3379.59Show/hide
Query:  HLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLV
        H +VPC +KPVS GDQSTA NG  VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE L+K I  IDSSPDPETE+DKAMEDEAFRIFSSK+  ++
Subjt:  HLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLV

A0A1S3CNV6 uncharacterized protein LOC103502587 isoform X22.6e-4384.68Show/hide
Query:  MKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAF
        MKHHPNTNAPYALHLKVPC +KPVS  DQSTAPNG  VDRPICVGDQNEVLEKSQLEAIASSSEIHN LNDE LRK I  IDSS DPETELDKAMEDEAF
Subjt:  MKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAF

Query:  RIFSSKVLLLV
        RIFSSK+  ++
Subjt:  RIFSSKVLLLV

A0A5A7TPU7 Uncharacterized protein7.5e-5180.29Show/hide
Query:  KPSR-RTV--RQAFETKRFNILWVLDNVRSAMKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNAL
        +P+R RT+    +F  K+F ILW+L NVRSAMKHHPNTNAPYALHLKVPC +KPVS  DQSTAPNG  VDRPICVGDQNEVLEKSQLEAIASSSEIHN L
Subjt:  KPSR-RTV--RQAFETKRFNILWVLDNVRSAMKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNAL

Query:  NDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK
        NDE LRK I  IDSS DPETELDKAMEDEAFRIFSSK
Subjt:  NDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK

A0A5D3CJI3 Uncharacterized protein1.8e-4475.18Show/hide
Query:  KPSR-RTV--RQAFETKRFNILWVLDNVRSAMKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNAL
        +P+R RT+    +F  K+F ILW+L NVRSAMKHHPNTNAPYALHLKVPC +KPVS  DQS        +RPICVGDQNEVLEKSQLEAIASSSEIHN L
Subjt:  KPSR-RTV--RQAFETKRFNILWVLDNVRSAMKHHPNTNAPYALHLKVPC-VKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNAL

Query:  NDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK
        NDE LRK I  IDSS DPETELDKAMEDEAFRIFSSK
Subjt:  NDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X17.5e-3582.47Show/hide
Query:  HLKVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLV
        H +VPCVKPVSAGDQSTAPNG LVDRPICV DQ+EVLEKSQLEAIASSSEI N LNDESL+KLI  I SSPDPETELD+AMEDEAFRIFSSK+  ++
Subjt:  HLKVPCVKPVSAGDQSTAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein1.3e-1550Show/hide
Query:  KVPCVKPVSAGD------QSTAPNGPL----VDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK
        +VP  +P  A D      Q  +   P     V RPI V ++  +LEK+Q EAIASSSEI  AL DE L+KLIY IDSS +P  ELD+AM  EAFR F+ K
Subjt:  KVPCVKPVSAGD------QSTAPNGPL----VDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK

Query:  VL
        +L
Subjt:  VL

AT4G28820.2 HIT-type Zinc finger family protein1.3e-1550Show/hide
Query:  KVPCVKPVSAGD------QSTAPNGPL----VDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK
        +VP  +P  A D      Q  +   P     V RPI V ++  +LEK+Q EAIASSSEI  AL DE L+KLIY IDSS +P  ELD+AM  EAFR F+ K
Subjt:  KVPCVKPVSAGD------QSTAPNGPL----VDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSK

Query:  VL
        +L
Subjt:  VL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGACATCGAAGCCATTATTTCCAAGGCCATGAGTGTTGGAGCTTTAATAGAGATTGATATTGCTGAGGAGGGATGCTTTATCTTATACCATGACAATAATGTTGT
CAAGTTGAAGGATTCATTCGAGTCTTTATATTGGGTTATTTCGATTTTGTCAAAACCCTCTCGTAGGACGGTGAGGCAAGCGTTTGAGACTAAGAGATTCAACATTCTAT
GGGTCCTCGACAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTAAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGGGGACCAA
TCAACTGCTCCTAATGGACCACTTGTAGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGCTTCTTCGTCAGAAATACA
CAATGCTTTGAATGATGAAAGCCTCCGGAAGCTCATCTATGTCATCGATAGTTCGCCAGATCCAGAAACTGAACTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTT
TCAGCAGCAAGGTACTGTTATTGGTCAAAGTGTTGTCTAATATTTATGTTCGTTTGACTTATGATGCAGTTGTTACGAGCATGTCAGATAAATTGTTTCGTTTGTTTCAA
GTATTTATTCTTTCTCTGTTGGTTAGATATCGTCCCTCATCTACTCCTAGCCCTGATGGTCACAGATGGAGGAGAGAAAACTTGTTCCATGTCCCACCCCCTCACCATGG
GTGCCCCACCCCCTTATCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGACATCGAAGCCATTATTTCCAAGGCCATGAGTGTTGGAGCTTTAATAGAGATTGATATTGCTGAGGAGGGATGCTTTATCTTATACCATGACAATAATGTTGT
CAAGTTGAAGGATTCATTCGAGTCTTTATATTGGGTTATTTCGATTTTGTCAAAACCCTCTCGTAGGACGGTGAGGCAAGCGTTTGAGACTAAGAGATTCAACATTCTAT
GGGTCCTCGACAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTAAAGTGCCCTGTGTTAAGCCTGTGTCTGCAGGGGACCAA
TCAACTGCTCCTAATGGACCACTTGTAGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCTATTGCTTCTTCGTCAGAAATACA
CAATGCTTTGAATGATGAAAGCCTCCGGAAGCTCATCTATGTCATCGATAGTTCGCCAGATCCAGAAACTGAACTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTT
TCAGCAGCAAGGTACTGTTATTGGTCAAAGTGTTGTCTAATATTTATGTTCGTTTGACTTATGATGCAGTTGTTACGAGCATGTCAGATAAATTGTTTCGTTTGTTTCAA
GTATTTATTCTTTCTCTGTTGGTTAGATATCGTCCCTCATCTACTCCTAGCCCTGATGGTCACAGATGGAGGAGAGAAAACTTGTTCCATGTCCCACCCCCTCACCATGG
GTGCCCCACCCCCTTATCAAATTAA
Protein sequenceShow/hide protein sequence
MEDIEAIISKAMSVGALIEIDIAEEGCFILYHDNNVVKLKDSFESLYWVISILSKPSRRTVRQAFETKRFNILWVLDNVRSAMKHHPNTNAPYALHLKVPCVKPVSAGDQ
STAPNGPLVDRPICVGDQNEVLEKSQLEAIASSSEIHNALNDESLRKLIYVIDSSPDPETELDKAMEDEAFRIFSSKVLLLVKVLSNIYVRLTYDAVVTSMSDKLFRLFQ
VFILSLLVRYRPSSTPSPDGHRWRRENLFHVPPPHHGCPTPLSN