CuGenDBv2

Gene ID	Spg037859
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	cleavage and polyadenylation specificity factor subunit 1
Genome location	scaffold12:38847848..38853636
RNA-Seq Expression	Spg037859
Synteny	Spg037859
Gene Ontology terms	GO:0006378 - mRNA polyadenylation (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003684 - damaged DNA binding (molecular function)
InterPro domains	IPR004871 - Cleavage/polyadenylation specificity factor, A subunit, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571759.1 Cleavage and polyadenylation specificity factor subunit 1, partial [Cucurbita argyrosperma subsp. sororia]

5.2e-14

97.83

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

XP_022157087.1 cleavage and polyadenylation specificity factor subunit 1 [Momordica charantia]

2.4e-14

97.83

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD+DNSQTLV
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

XP_022973595.1 cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita maxima]

5.2e-14

97.83

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

XP_023520840.1 cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita pepo subsp. pepo]

5.2e-14

97.83

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

XP_038887723.1 cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Benincasa hispida]

5.2e-14

97.83

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKI9 Uncharacterized protein

2.5e-14

97.83

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

A0A5A7U3R4 Cleavage and polyadenylation specificity factor subunit 1 isoform X3

9.6e-14

95.65

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LN TTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

A0A6J1DTM4 cleavage and polyadenylation specificity factor subunit 1

1.1e-14

97.83

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD+DNSQTLV
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

A0A6J1I7X9 cleavage and polyadenylation specificity factor subunit 1 isoform X1

2.5e-14

97.83

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

A0A6J1IBS0 cleavage and polyadenylation specificity factor subunit 1 isoform X2

2.5e-14

97.83

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

SwissProt top hits

e value

%identity

Alignment

Q7XWP1 Probable cleavage and polyadenylation specificity factor subunit 1

7.4e-11

82.22

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Query:  NTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        NTTTKENETLLA+GTAYV GEDVAARGRVLLFS  K  +NSQ LV
Subjt:  NTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

Q9FGR0 Cleavage and polyadenylation specificity factor subunit 1

1.3e-12

82.61

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Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LN +T ENETLLAVGTAYVQGEDVAARGRVLLFS GK+ DNSQ +V
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

Arabidopsis top hits

e value

%identity

Alignment

AT5G51660.1 cleavage and polyadenylation specificity factor 160

9.5e-14

82.61

Show/hide

Query:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV
        LN +T ENETLLAVGTAYVQGEDVAARGRVLLFS GK+ DNSQ +V
Subjt:  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV

Sequences

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CDS sequence

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ATGGTGGAGAAGCAAGGCACTGCGAAAAACAGAGCATTCATAGCTTTACTAGAAAAGGAAGACGACAACTTCCTGTCCTTTGAGAAAGAGATTGATGAAGATATTATCAG
TTTCTATAAAAACTTATATTTAGATGATAATCAAGATCGGTTCACCCTTGATGGCATTTCTTGGGCTTCTATTGAGGACTCTAGTAGGGTGCCTCTGAGAATATCCTATA
AGAAAGAGTCCTCCATCCATGATTGTTGTGATGATGAAAACCAGTCATGGAACTTAGGCCTGCGCAGAGGTGTTTTTGACCATGAACTCGCAAATTGGGTTGCCCTAGTG
GAAAAGTTGAGTGCTTTTAATGTGGGAAGTGAGAAAGATAGCCTAGTTTGGACAGCAGGTGAGTCAGGGGAGAGGAAGGGAGCTATGGAATCTCCCTTAAACACAACCAC
AAAGGAGAATGAAACACTTCTAGCAGTTGGAACAGCATATGTGCAAGGAGAGGATGTTGCTGCAAGAGGAAGAGTGCTTTTATTTTCTGTTGGAAAAGATGTCGATAATT
CGCAAACCTTGGTATATTTATGTGTAGATTTATTTCATTCCAATATAAGTTTTTCTTTTATTTAG

mRNA sequence

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Protein sequence

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MVEKQGTAKNRAFIALLEKEDDNFLSFEKEIDEDIISFYKNLYLDDNQDRFTLDGISWASIEDSSRVPLRISYKKESSIHDCCDDENQSWNLGLRRGVFDHELANWVALV
EKLSAFNVGSEKDSLVWTAGESGERKGAMESPLNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLVYLCVDLFHSNISFSFI

Spg037859 (gene) of Sponge gourd (cylindrica) v1 genome