; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg037879 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg037879
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm5
Genome locationscaffold12:41774565..41777847
RNA-Seq ExpressionSpg037879
SyntenySpg037879
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0008380 - RNA splicing (biological process)
GO:0097525 - spliceosomal snRNP complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR033871 - Sm-like protein LSm5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADR71256.1 U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]2.6e-3566.67Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY                                          E+TAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPDPE
        GRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPDPE
KAF7840434.1 sm-like protein LSM5 [Senna tora]9.0e-3666.67Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEY  +                                   ++  EITAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPDPE
        GRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPDPE
KAG7036265.1 Sm-like protein LSM5, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-3567.44Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY                                          EITAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPDPE
        GRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPDPE
KZN07868.1 hypothetical protein DCAR_000537 [Daucus carota subsp. sativus]7.3e-3869.77Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYL + L L                             +  E SE TAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPDPE
        GRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPDPE
XP_004504703.1 sm-like protein LSM5 [Cicer arietinum]2.0e-3567.44Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY                                          EITAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPDPE
        GRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPDPE
TrEMBL top hitse value%identityAlignment
A0A0B0NQ45 U6 snRNA-associated Sm-like protein LSm59.7e-3667.44Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY                                          EITAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPDPE
        GRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPDPE
A0A166FK16 U6 snRNA-associated Sm-like protein LSm53.6e-3869.77Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYL + L L                             +  E SE TAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPDPE
        GRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPDPE
A0A2P5WT65 U6 snRNA-associated Sm-like protein LSm59.7e-3667.44Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY                                          EITAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPDPE
        GRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPDPE
A0A6A3A5D5 U6 snRNA-associated Sm-like protein LSm59.7e-3667.44Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY                                          EITAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPDPE
        GRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPDPE
I3SAC1 U6 snRNA-associated Sm-like protein LSm59.7e-3667.44Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY                                          EITAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPDPE
        GRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPDPE
SwissProt top hitse value%identityAlignment
P62322 U6 snRNA-associated Sm-like protein LSm55.7e-2552.07Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAEGRR
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+                                          EIT EGRR
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAEGRR

Query:  ITKLDQILLNGNNIAILVPGG
        ITKLDQILLNGNNI +LVPGG
Subjt:  ITKLDQILLNGNNIAILVPGG
Q2HJH0 U6 snRNA-associated Sm-like protein LSm55.7e-2552.07Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAEGRR
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+                                          EIT EGRR
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAEGRR

Query:  ITKLDQILLNGNNIAILVPGG
        ITKLDQILLNGNNI +LVPGG
Subjt:  ITKLDQILLNGNNIAILVPGG
Q5R628 U6 snRNA-associated Sm-like protein LSm55.7e-2552.07Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAEGRR
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+                                          EIT EGRR
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAEGRR

Query:  ITKLDQILLNGNNIAILVPGG
        ITKLDQILLNGNNI +LVPGG
Subjt:  ITKLDQILLNGNNIAILVPGG
Q9FKB0 Sm-like protein LSM52.7e-3563.78Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEY                                          EITAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPD
        GRR+TKLDQILLNGNNIAILVPGGSP+
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPD
Q9Y4Y9 U6 snRNA-associated Sm-like protein LSm55.7e-2552.07Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAEGRR
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+                                          EIT EGRR
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAEGRR

Query:  ITKLDQILLNGNNIAILVPGG
        ITKLDQILLNGNNI +LVPGG
Subjt:  ITKLDQILLNGNNIAILVPGG
Arabidopsis top hitse value%identityAlignment
AT1G21190.1 Small nuclear ribonucleoprotein family protein5.7e-0442.22Show/hide
Query:  PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYL
        P +LI   I  +I+V ++ D+EL G L  FD ++NM+L DV E +
Subjt:  PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYL
AT1G76860.1 Small nuclear ribonucleoprotein family protein9.6e-0441.86Show/hide
Query:  PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE
        P +LI   +  +I+V ++ D+EL G L  FD ++NM+L DV E
Subjt:  PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE
AT5G48870.1 Small nuclear ribonucleoprotein family protein1.9e-3663.78Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEY                                          EITAE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAE

Query:  GRRITKLDQILLNGNNIAILVPGGSPD
        GRR+TKLDQILLNGNNIAILVPGGSP+
Subjt:  GRRITKLDQILLNGNNIAILVPGGSPD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAACAATCCTTCGCAGCTGCTGCCCTCAGAGTTGATCGACCGATGTATTGGCTCTAAAATATGGGTCATTATGAAAGGCGACAAAGAGCTTGTTGGCACTCTCAG
AGGATTCGATGTCTATGTCAACATGGTTCTTGAAGATGTCACTGAATATCTTAGGATGGGATTGGGGTTGGAGGTTGGAGGAAAAGAGTTGACAAGAGGAGGAGGATTGC
CATATCCATGTCCTGTTTCTGCTGAGATTTCGTTGATGAAAACGTTTGTTTTCATGGAGGTAAGTGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATT
CTACTAAATGGAAACAACATTGCTATTCTCGTCCCCGGTGGATCGCCCGACCCGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAACAATCCTTCGCAGCTGCTGCCCTCAGAGTTGATCGACCGATGTATTGGCTCTAAAATATGGGTCATTATGAAAGGCGACAAAGAGCTTGTTGGCACTCTCAG
AGGATTCGATGTCTATGTCAACATGGTTCTTGAAGATGTCACTGAATATCTTAGGATGGGATTGGGGTTGGAGGTTGGAGGAAAAGAGTTGACAAGAGGAGGAGGATTGC
CATATCCATGTCCTGTTTCTGCTGAGATTTCGTTGATGAAAACGTTTGTTTTCATGGAGGTAAGTGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATT
CTACTAAATGGAAACAACATTGCTATTCTCGTCCCCGGTGGATCGCCCGACCCGGAATAG
Protein sequenceShow/hide protein sequence
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYLRMGLGLEVGGKELTRGGGLPYPCPVSAEISLMKTFVFMEVSEITAEGRRITKLDQI
LLNGNNIAILVPGGSPDPE