CuGenDBv2

Gene ID	Spg037917
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Zinc finger, C6HC-type
Genome location	scaffold12:40503001..40503918
RNA-Seq Expression	Spg037917
Synteny	Spg037917
Gene Ontology terms	GO:0000209 - protein polyubiquitination (biological process) GO:0032436 - positive regulation of proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0000151 - ubiquitin ligase complex (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0031624 - ubiquitin conjugating enzyme binding (molecular function) GO:0043167 - ion binding (molecular function) GO:0061630 - ubiquitin protein ligase activity (molecular function) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	IPR031127 - E3 ubiquitin ligase RBR family

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581788.1 putative E3 ubiquitin-protein ligase ARI5, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-19

59.09

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Query:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA
        HIA+KL  ++AVKCP+PKC   L+ ++CDSFV +EVLER GDAL KAM+LK K  YC FKD S  M+D+  E + A E P C RMFCA
Subjt:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA

KAG7018238.1 putative E3 ubiquitin-protein ligase ARI5, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-19

59.09

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Query:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA
        HIA+KL  ++AVKCP+PKC   L+ ++CDSFV +EVLER GDAL KAM+LK K  YC FKD S  M+D+  E + A E P C RMFCA
Subjt:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA

XP_022152679.1 E3 ubiquitin-protein ligase RNF144A-like [Momordica charantia]

2.4e-22

66.67

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Query:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEA--VTASEFPSCRRMFCA
        HIA+KL  N+AVKCP+PKC   L+  +CDSFV REVLER GDAL +A+IL   R YC F D S AMIDD GEA  VTA+E PSCRRMFCA
Subjt:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEA--VTASEFPSCRRMFCA

XP_022956145.1 probable E3 ubiquitin-protein ligase ARI10 [Cucurbita moschata]

2.5e-19

59.09

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Query:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA
        HIA+KL  ++AVKCP+PKC   L+ ++CDSFV +EVLER GDAL KAM+LK K  YC FKD S  M+D+  E + A E P C RMFCA
Subjt:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA

XP_022980686.1 probable E3 ubiquitin-protein ligase ARI5 [Cucurbita maxima]

1.9e-19

61.36

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Query:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA
        HIA+KL  +LAVKCP+PKC   LK ++CDSFV +EVLER GDAL KAM+LK K  YC FKD S  M+D+  E   A E P C RMFCA
Subjt:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA

TrEMBL top hits

e value

%identity

Alignment

A0A2J6MCG2 Uncharacterized protein

6.5e-18

51.69

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Query:  HIASKLPQNLA-VKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA
        H+++K+ +N+  VKCP+PKC   +  +IC S V +EVLER  DAL + +IL +++FYC FKD S  ++DD GEAVT+SE P+C R+FCA
Subjt:  HIASKLPQNLA-VKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA

A0A6J1DGR7 E3 ubiquitin-protein ligase RNF144A-like

1.2e-22

66.67

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Query:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEA--VTASEFPSCRRMFCA
        HIA+KL  N+AVKCP+PKC   L+  +CDSFV REVLER GDAL +A+IL   R YC F D S AMIDD GEA  VTA+E PSCRRMFCA
Subjt:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEA--VTASEFPSCRRMFCA

A0A6J1GX07 probable E3 ubiquitin-protein ligase ARI10

1.2e-19

59.09

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Query:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA
        HIA+KL  ++AVKCP+PKC   L+ ++CDSFV +EVLER GDAL KAM+LK K  YC FKD S  M+D+  E + A E P C RMFCA
Subjt:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA

A0A6J1IU95 probable E3 ubiquitin-protein ligase ARI5

9.1e-20

61.36

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Query:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA
        HIA+KL  +LAVKCP+PKC   LK ++CDSFV +EVLER GDAL KAM+LK K  YC FKD S  M+D+  E   A E P C RMFCA
Subjt:  HIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA

A0A6S7L6V8 Uncharacterized protein

2.9e-18

52.81

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Query:  HIASKLPQNLA-VKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA
        H++ K+ +N+A VKCP PKC   +  ++C S V +EVLER  DAL +++IL T++FYC FKD S  ++DD GEAVT+SE P+C R+FCA
Subjt:  HIASKLPQNLA-VKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASEFPSCRRMFCA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G14250.1 RING/U-box superfamily protein

1.4e-09

32.61

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Query:  MNHIASKLPQNLA-VKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMI-DDRGEA-VTASEFPSCRRMFC
        + ++A+K+ +N + +KCP  +C   ++   C   + ++V +R    L +++I    +FYC FKD S  M+ ++ G+A VT +E  SC R+FC
Subjt:  MNHIASKLPQNLA-VKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMI-DDRGEA-VTASEFPSCRRMFC

AT3G53690.1 RING/U-box superfamily protein

1.5e-11

38.2

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Query:  HIASKLPQN-LAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEA-VTASEFPSCRRMFC
        +IA+KL  N L+++CP   C   L+   C   + +EV +R GDAL +A+++++K+FYC +KD S  +  +  E  +  SE P C RM C
Subjt:  HIASKLPQN-LAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEA-VTASEFPSCRRMFC

Sequences

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CDS sequence

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ATGGGACACAACTCTTTGAATGTATATGATGTAATTGATAATGATGAGATTCAGATGGATATGTGGTTATACAATAAATTGATGCATCCTATGAATCACATAGCCTCGAA
GCTTCCACAAAACTTGGCGGTGAAGTGCCCCAAGCCAAAGTGTGTGGTGGCGCTGAAGTCGAAGATCTGCGATTCTTTCGTTCTGAGAGAGGTGTTGGAACGCAAGGGAG
ATGCTTTGGCGAAGGCGATGATTCTAAAGACGAAGAGATTCTACTGTCTGTTCAAAGACTACTCGACAGCGATGATTGATGACAGAGGGGAGGCGGTGACGGCGTCGGAA
TTTCCGAGTTGTAGGAGAATGTTCTGCGCAGTGTAA

mRNA sequence

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Protein sequence

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MGHNSLNVYDVIDNDEIQMDMWLYNKLMHPMNHIASKLPQNLAVKCPKPKCVVALKSKICDSFVLREVLERKGDALAKAMILKTKRFYCLFKDYSTAMIDDRGEAVTASE
FPSCRRMFCAV

Spg037917 (gene) of Sponge gourd (cylindrica) v1 genome