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Spg038007 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038007
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationscaffold12:41629691..41632113
RNA-Seq ExpressionSpg038007
SyntenySpg038007
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606311.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]7.2e-1771.43Show/hide
Query:  MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQK
        MAD E AVPKFGEWNDRD+TPPDNYTAIF +VREERQ+QG R PT P+N +  +NQN   NQK
Subjt:  MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQK

KAG7036250.1 hypothetical protein SDJN02_03052 [Cucurbita argyrosperma subsp. argyrosperma]8.5e-1870.15Show/hide
Query:  MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMKS
        MAD E AVPKFGEWNDRD+TPPDNYTAIF +VREERQ+QG R PT P+N +  +NQN   NQKV  S
Subjt:  MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMKS

XP_006340017.1 PREDICTED: RPM1-interacting protein 4 isoform X1 [Solanum tuberosum]1.4e-0446.15Show/hide
Query:  ADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMK
        +D  AAVP+FGEW++ D    DNYT IFN+VREE+Q      P+   +  S N Q H   +K MK
Subjt:  ADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMK

XP_015574064.1 RPM1-interacting protein 4 isoform X2 [Ricinus communis]1.1e-0440Show/hide
Query:  ADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMKSSLPF
        +D+ AAVPKFG+W++ +    D YT IFN+VREE+Q    + P  P   +S+ +  H  N+   KS   F
Subjt:  ADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMKSSLPF

XP_038888923.1 RPM1-interacting protein 4-like [Benincasa hispida]1.6e-1671.88Show/hide
Query:  MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNV-DSTNNQNHRHNQK
        MADNEA VPKFGEW+DRD+  P+NYTAIF +VRE RQE G+RA T PR++ +STNNQNH HNQK
Subjt:  MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNV-DSTNNQNHRHNQK

TrEMBL top hitse value%identityAlignment
A0A0A0L950 AvrRpt-cleavage domain-containing protein7.2e-1568.75Show/hide
Query:  MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKV
        MADNE AVPKFGEW+D D+  P+NYTAIFN+VREERQ+Q VR  T  R +DSTN+QNH  NQK+
Subjt:  MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKV

A0A1S3ZGX8 RPM1-interacting protein 4-like isoform X11.2e-0447.83Show/hide
Query:  DNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMKSSLPF
        D  AAVP+FGEW++ D    DNYT IFN+VREERQ  G   P+   +  S N Q  R  +K MK   P+
Subjt:  DNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMKSSLPF

A0A1S3ZH34 RPM1-interacting protein 4-like isoform X21.2e-0447.83Show/hide
Query:  DNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMKSSLPF
        D  AAVP+FGEW++ D    DNYT IFN+VREERQ  G   P+   +  S N Q  R  +K MK   P+
Subjt:  DNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMKSSLPF

M1CPC9 RIN4c protein6.8e-0546.15Show/hide
Query:  ADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMK
        +D  AAVP+FGEW++ D    DNYT IFN+VREE+Q      P+   +  S N Q H   +K MK
Subjt:  ADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMK

M1CPD0 RIN4c protein6.8e-0546.15Show/hide
Query:  ADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMK
        +D  AAVP+FGEW++ D    DNYT IFN+VREE+Q      P+   +  S N Q H   +K MK
Subjt:  ADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G25070.1 RPM1 interacting protein 48.8e-0543.64Show/hide
Query:  VPKFGEWNDRDSTPPDNYTAIFNRVREERQ-----EQGVRAPT--SPRNVDSTNN
        VPKFG+W++ + +  D YT IFN+VREER          R PT  S RN ++T++
Subjt:  VPKFGEWNDRDSTPPDNYTAIFNRVREERQ-----EQGVRAPT--SPRNVDSTNN

AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein8.8e-0535.71Show/hide
Query:  VPKFGEWNDRDSTPPDNYTAIFNRVREERQ--EQGVRAPTS----PRNVD-STNNQNHRHNQKVMKSSLP
        +PKFGEW+  +    + +T IFN+ R++++  +  V  P S    PRN +   NN NH HN     S  P
Subjt:  VPKFGEWNDRDSTPPDNYTAIFNRVREERQ--EQGVRAPTS----PRNVD-STNNQNHRHNQKVMKSSLP

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein3.3e-0440.43Show/hide
Query:  MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSP
        M+D    +PKFGEW+  D    + +T IFN+ R+E++  G   P SP
Subjt:  MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATAACGAAGCTGCGGTTCCAAAATTCGGTGAATGGAATGACAGGGATTCCACACCACCGGACAACTACACGGCTATATTCAACAGGGTGAGGGAAGAGAGACA
GGAACAGGGAGTACGAGCACCGACGTCGCCGCGGAACGTTGACAGCACAAACAACCAAAATCACAGACACAATCAAAAGGTAATGAAGAGCTCTCTTCCATTTCTCAGCC
AACCACATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATAACGAAGCTGCGGTTCCAAAATTCGGTGAATGGAATGACAGGGATTCCACACCACCGGACAACTACACGGCTATATTCAACAGGGTGAGGGAAGAGAGACA
GGAACAGGGAGTACGAGCACCGACGTCGCCGCGGAACGTTGACAGCACAAACAACCAAAATCACAGACACAATCAAAAGGTAATGAAGAGCTCTCTTCCATTTCTCAGCC
AACCACATTAG
Protein sequenceShow/hide protein sequence
MADNEAAVPKFGEWNDRDSTPPDNYTAIFNRVREERQEQGVRAPTSPRNVDSTNNQNHRHNQKVMKSSLPFLSQPH