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Spg038049 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038049
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold12:43457015..43461223
RNA-Seq ExpressionSpg038049
SyntenySpg038049
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067918.1 hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa]3.3e-1952.63Show/hide
Query:  KKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL
        ++V FF+WQV+LGRVNT  RL R    ++  FCC+LCQKAEEDLDHL   C++AR+ WS F +  G    G R  R  IEEFLLH  F+++  FL
Subjt:  KKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL
TYK04295.1 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cucumis melo var. makuwa]5.7e-1952.63Show/hide
Query:  KKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL
        ++V FF+WQV+LGRVNT  RL R    ++  FCC+LCQKAEEDLDHL   C++AR+ WS F +  G    G R  R  IEEFLLH  F+++  FL
Subjt:  KKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL
TYK11201.1 SIL1 [Cucumis melo var. makuwa]1.9e-2251.38Show/hide
Query:  KVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL
        ++KVPKK  FF+ QV+LG +NT  RL + M   +  F C LCQKA+EDLD+L W C+  R+ W+ F + F    VGQR  R  IEEFLLHP FREK   L
Subjt:  KVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL

Query:  WHVGVCTIL
        W  GVC ++
Subjt:  WHVGVCTIL
TYK29954.1 reverse transcriptase [Cucumis melo var. makuwa]4.2e-3052.27Show/hide
Query:  LRSSRRDIRFWSSNPSGDFSCSSFFQSLLNPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCE
        L    R++  WS+NPS  FS  S F  LL+PSP+REFVF  +W++KV KKV FF WQV+L R N   RL R   P  +  CCILC+KA+EDLDHLLW C+
Subjt:  LRSSRRDIRFWSSNPSGDFSCSSFFQSLLNPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCE

Query:  FARSAWSRFFEVFGYQTVGQRRCREMIEEFLL
        +AR+ W  F + F  +  G R  R+ IEEFLL
Subjt:  FARSAWSRFFEVFGYQTVGQRRCREMIEEFLL
XP_008464727.1 PREDICTED: uncharacterized protein LOC103502543 [Cucumis melo]2.5e-1954.17Show/hide
Query:  SLRSSRRDIRFWSSNPSGDFSCSSFFQSLLNPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHL
        S R  RRDI  W+ NPS  F   S F  LL+P+P++E VF  +W   VPKKV+FF+WQV+L +VN   RL R     + LFCC+LCQKAE DLDHL
Subjt:  SLRSSRRDIRFWSSNPSGDFSCSSFFQSLLNPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHL
TrEMBL top hitse value%identityAlignment
A0A1S3CMM8 uncharacterized protein LOC1035025431.2e-1954.17Show/hide
Query:  SLRSSRRDIRFWSSNPSGDFSCSSFFQSLLNPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHL
        S R  RRDI  W+ NPS  F   S F  LL+P+P++E VF  +W   VPKKV+FF+WQV+L +VN   RL R     + LFCC+LCQKAE DLDHL
Subjt:  SLRSSRRDIRFWSSNPSGDFSCSSFFQSLLNPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHL
A0A5A7VJE4 zf-RVT domain-containing protein1.6e-1952.63Show/hide
Query:  KKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL
        ++V FF+WQV+LGRVNT  RL R    ++  FCC+LCQKAEEDLDHL   C++AR+ WS F +  G    G R  R  IEEFLLH  F+++  FL
Subjt:  KKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL
A0A5D3BYR2 Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X22.7e-1952.63Show/hide
Query:  KKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL
        ++V FF+WQV+LGRVNT  RL R    ++  FCC+LCQKAEEDLDHL   C++AR+ WS F +  G    G R  R  IEEFLLH  F+++  FL
Subjt:  KKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL
A0A5D3CHC7 SIL19.1e-2351.38Show/hide
Query:  KVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL
        ++KVPKK  FF+ QV+LG +NT  RL + M   +  F C LCQKA+EDLD+L W C+  R+ W+ F + F    VGQR  R  IEEFLLHP FREK   L
Subjt:  KVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQTVGQRRCREMIEEFLLHPLFREKEKFL

Query:  WHVGVCTIL
        W  GVC ++
Subjt:  WHVGVCTIL
A0A5D3E255 Reverse transcriptase2.0e-3052.27Show/hide
Query:  LRSSRRDIRFWSSNPSGDFSCSSFFQSLLNPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCE
        L    R++  WS+NPS  FS  S F  LL+PSP+REFVF  +W++KV KKV FF WQV+L R N   RL R   P  +  CCILC+KA+EDLDHLLW C+
Subjt:  LRSSRRDIRFWSSNPSGDFSCSSFFQSLLNPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCE

Query:  FARSAWSRFFEVFGYQTVGQRRCREMIEEFLL
        +AR+ W  F + F  +  G R  R+ IEEFLL
Subjt:  FARSAWSRFFEVFGYQTVGQRRCREMIEEFLL
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.4e-0431.01Show/hide
Query:  DPKKDNQSRQER----VSLRSSRRDIRFWSSNPSGDFSCSSFFQSLL---NPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLAL
        DP   N +R E     + L +  RD   W  +  G FS  S ++ L     P P+    F+CLWKV+VP++V  F+W V    V T +   R      A 
Subjt:  DPKKDNQSRQER----VSLRSSRRDIRFWSSNPSGDFSCSSFFQSLL---NPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLAL

Query:  FCCILCQKAEEDLDHLLWGCEFARSAWSR
          C +C+   E + H+L  C      W R
Subjt:  FCCILCQKAEEDLDHLLWGCEFARSAWSR
Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.0e-0535.29Show/hide
Query:  LNPSPSREFVFSCLW-KVKVPKKVLFFVWQVVLGRVNTFKRL--WR-VMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRF
        LNP   R   F  +W K K+PK   F  W  +  R++T  R+  W  + PP      C+ C   +E   HL + CEFAR  W  F
Subjt:  LNPSPSREFVFSCLW-KVKVPKKVLFFVWQVVLGRVNTFKRL--WR-VMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGAGGCCTCTTCGCCGTCTTTCGCAAGGGTGCAACAGACCAGTCCTTTCTCTGAGGGTCCATCCCAATCAATGGTCAAGGTAAACTCAAATGGGATGCTTAACCA
GGTACACTTCTCTTCTTTGGATTCTTTACCTTCCACTTCAGGTATAGGGGATGTGAGAGGCTTTCCTTTTCAGTGTGGCTTGTCCTATCCTTTTTTTGTTCCTATGAGTT
CTTTTCCGGGAATGGGGGGAGGGAGTCAAGTAGGGAATGCTTTATCATCTATTTACACAGTCCTGGTTAATCCTGGTTCTTTTTCTGGAGGTGTCTTTCCTCACCCAGTG
GCTTACTTGTCGGGAGAGTGTGTTCCGTCTTTTATTCCAAGCTCTAGCTCTTTTAAAAGCGGGTTTGATAGGAATAGCCATCCTTGCATGGCGGGGTTGCTTTTAGGGGA
TCCGGGTTGCCAATCTCAATCTCTTGGGTATCAAGGTGTTCCTTTCCAAGGAGGCGTCATTGGTCAGTGGCGATCTGGTTGGGCTACTTTAGCCTCGGTTGGCATTCAGG
CGACCCCGGCTAAGAAAGATCCTACGAATTCTACAGAACCTCTAGATGACCCTAAGAAAGATAACCAATCCCGTCAAGAGCGGGTAAGTCTGAGATCGAGTAGGAGGGAT
ATTCGCTTTTGGAGTTCCAACCCTTCTGGGGACTTTTCTTGCAGTTCGTTCTTTCAATCCTTGTTAAATCCCTCCCCGAGTAGAGAGTTTGTCTTCTCATGTCTGTGGAA
GGTTAAAGTTCCAAAGAAAGTTTTGTTCTTTGTTTGGCAAGTCGTCCTGGGTCGTGTTAACACTTTTAAGAGACTTTGGAGAGTGATGCCCCCGTGGTTGGCCCTTTTTT
GTTGCATTCTTTGCCAGAAGGCGGAGGAAGATCTTGATCATTTGTTGTGGGGTTGTGAGTTTGCCCGCTCTGCCTGGAGCCGCTTCTTTGAGGTTTTCGGGTATCAGACT
GTGGGCCAACGTCGTTGTAGGGAGATGATCGAGGAGTTCCTCCTCCATCCGCTGTTTCGAGAGAAGGAAAAATTTTTATGGCATGTTGGTGTTTGCACCATTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACGAGGCCTCTTCGCCGTCTTTCGCAAGGGTGCAACAGACCAGTCCTTTCTCTGAGGGTCCATCCCAATCAATGGTCAAGGTAAACTCAAATGGGATGCTTAACCA
GGTACACTTCTCTTCTTTGGATTCTTTACCTTCCACTTCAGGTATAGGGGATGTGAGAGGCTTTCCTTTTCAGTGTGGCTTGTCCTATCCTTTTTTTGTTCCTATGAGTT
CTTTTCCGGGAATGGGGGGAGGGAGTCAAGTAGGGAATGCTTTATCATCTATTTACACAGTCCTGGTTAATCCTGGTTCTTTTTCTGGAGGTGTCTTTCCTCACCCAGTG
GCTTACTTGTCGGGAGAGTGTGTTCCGTCTTTTATTCCAAGCTCTAGCTCTTTTAAAAGCGGGTTTGATAGGAATAGCCATCCTTGCATGGCGGGGTTGCTTTTAGGGGA
TCCGGGTTGCCAATCTCAATCTCTTGGGTATCAAGGTGTTCCTTTCCAAGGAGGCGTCATTGGTCAGTGGCGATCTGGTTGGGCTACTTTAGCCTCGGTTGGCATTCAGG
CGACCCCGGCTAAGAAAGATCCTACGAATTCTACAGAACCTCTAGATGACCCTAAGAAAGATAACCAATCCCGTCAAGAGCGGGTAAGTCTGAGATCGAGTAGGAGGGAT
ATTCGCTTTTGGAGTTCCAACCCTTCTGGGGACTTTTCTTGCAGTTCGTTCTTTCAATCCTTGTTAAATCCCTCCCCGAGTAGAGAGTTTGTCTTCTCATGTCTGTGGAA
GGTTAAAGTTCCAAAGAAAGTTTTGTTCTTTGTTTGGCAAGTCGTCCTGGGTCGTGTTAACACTTTTAAGAGACTTTGGAGAGTGATGCCCCCGTGGTTGGCCCTTTTTT
GTTGCATTCTTTGCCAGAAGGCGGAGGAAGATCTTGATCATTTGTTGTGGGGTTGTGAGTTTGCCCGCTCTGCCTGGAGCCGCTTCTTTGAGGTTTTCGGGTATCAGACT
GTGGGCCAACGTCGTTGTAGGGAGATGATCGAGGAGTTCCTCCTCCATCCGCTGTTTCGAGAGAAGGAAAAATTTTTATGGCATGTTGGTGTTTGCACCATTTTGTGA
Protein sequenceShow/hide protein sequence
MNEASSPSFARVQQTSPFSEGPSQSMVKVNSNGMLNQVHFSSLDSLPSTSGIGDVRGFPFQCGLSYPFFVPMSSFPGMGGGSQVGNALSSIYTVLVNPGSFSGGVFPHPV
AYLSGECVPSFIPSSSSFKSGFDRNSHPCMAGLLLGDPGCQSQSLGYQGVPFQGGVIGQWRSGWATLASVGIQATPAKKDPTNSTEPLDDPKKDNQSRQERVSLRSSRRD
IRFWSSNPSGDFSCSSFFQSLLNPSPSREFVFSCLWKVKVPKKVLFFVWQVVLGRVNTFKRLWRVMPPWLALFCCILCQKAEEDLDHLLWGCEFARSAWSRFFEVFGYQT
VGQRRCREMIEEFLLHPLFREKEKFLWHVGVCTIL