CuGenDBv2

Gene ID	Spg038144
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	thylakoid lumenal protein TL20.3, chloroplastic
Genome location	scaffold12:39007454..39009332
RNA-Seq Expression	Spg038144
Synteny	Spg038144
Gene Ontology terms	NA
InterPro domains	IPR001646 - Pentapeptide repeat

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039683.1 thylakoid lumenal protein TL20.3 [Cucumis melo var. makuwa]

7.4e-56

97.46

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEAN TNAVLVRSVLTRSDLGGAIIVGADFSDAVIDL QKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCDATK
        LDRDGFCDQGTGLC+ATK
Subjt:  LDRDGFCDQGTGLCDATK

XP_008437129.1 PREDICTED: thylakoid lumenal protein TL20.3, chloroplastic [Cucumis melo]

7.4e-56

97.46

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEAN TNAVLVRSVLTRSDLGGAIIVGADFSDAVIDL QKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCDATK
        LDRDGFCDQGTGLC+ATK
Subjt:  LDRDGFCDQGTGLCDATK

XP_022156470.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X2 [Momordica charantia]

1.3e-55

97.46

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAII GADFSDAVIDL QKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCDATK
        LDRDGFCDQGTGLC+ATK
Subjt:  LDRDGFCDQGTGLCDATK

XP_038875985.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X1 [Benincasa hispida]

7.4e-56

97.46

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEAN TNAVLVRSVLTRSDLGGAIIVGADFSDAVIDL QKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCDATK
        LDRDGFCDQGTGLC+ATK
Subjt:  LDRDGFCDQGTGLCDATK

XP_038875988.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X3 [Benincasa hispida]

7.4e-56

97.46

Show/hide

Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEAN TNAVLVRSVLTRSDLGGAIIVGADFSDAVIDL QKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCDATK
        LDRDGFCDQGTGLC+ATK
Subjt:  LDRDGFCDQGTGLCDATK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KP67 Uncharacterized protein

2.3e-55

96.61

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEAN TNAVLVRSVLTRSDLGGAIIVGADFSDAVIDL QKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCDATK
        LDRDGFCDQ TGLC+ATK
Subjt:  LDRDGFCDQGTGLCDATK

A0A1S3ATE2 thylakoid lumenal protein TL20.3, chloroplastic

3.6e-56

97.46

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEAN TNAVLVRSVLTRSDLGGAIIVGADFSDAVIDL QKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCDATK
        LDRDGFCDQGTGLC+ATK
Subjt:  LDRDGFCDQGTGLCDATK

A0A5A7T9K1 Thylakoid lumenal protein TL20.3

3.6e-56

97.46

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEAN TNAVLVRSVLTRSDLGGAIIVGADFSDAVIDL QKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCDATK
        LDRDGFCDQGTGLC+ATK
Subjt:  LDRDGFCDQGTGLCDATK

A0A6J1DQD2 thylakoid lumenal protein TL20.3, chloroplastic isoform X2

6.1e-56

97.46

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAII GADFSDAVIDL QKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCDATK
        LDRDGFCDQGTGLC+ATK
Subjt:  LDRDGFCDQGTGLCDATK

A0A6J1DTJ6 thylakoid lumenal protein TL20.3, chloroplastic isoform X1

6.1e-56

97.46

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAII GADFSDAVIDL QKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCDATK
        LDRDGFCDQGTGLC+ATK
Subjt:  LDRDGFCDQGTGLCDATK

SwissProt top hits

e value

%identity

Alignment

B1WVN5 Pentapeptide repeat protein Rfr32

1.3e-10

49.35

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGC
        ADL++ L        A+LTNAVL  +++ R+    A I GADFS AV+D+ +   LC  A G NP TGVSTR SLGC
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGC

Q8H1Q1 Thylakoid lumenal protein TL20.3, chloroplastic

1.8e-52

90.43

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGA I GADFSDAVIDLLQKQALCKYA+GTNP+TGV TR SLGCGNSRRNAYG+PSSPLLSAPPQ+L
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCD
        L RDGFCD+ TGLCD
Subjt:  LDRDGFCDQGTGLCD

Arabidopsis top hits

e value

%identity

Alignment

AT1G12250.1 Pentapeptide repeat-containing protein

1.3e-53

90.43

Show/hide

Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGA I GADFSDAVIDLLQKQALCKYA+GTNP+TGV TR SLGCGNSRRNAYG+PSSPLLSAPPQ+L
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCD
        L RDGFCD+ TGLCD
Subjt:  LDRDGFCDQGTGLCD

AT1G12250.2 Pentapeptide repeat-containing protein

1.3e-53

90.43

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Query:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL
        ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGA I GADFSDAVIDLLQKQALCKYA+GTNP+TGV TR SLGCGNSRRNAYG+PSSPLLSAPPQ+L
Subjt:  ADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQL

Query:  LDRDGFCDQGTGLCD
        L RDGFCD+ TGLCD
Subjt:  LDRDGFCDQGTGLCD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGAAAAGTGCAGATTTGAGTGATACATTGATGGATCGAATGGTACTAAACGAAGCAAATTTGACAAATGCGGTTCTGGTCCGATCAGTGCTGACACGCAGCGATCT
CGGCGGTGCCATAATCGTTGGTGCCGACTTCAGCGACGCTGTCATTGACCTTCTCCAAAAGCAGGCACTTTGCAAGTATGCGAGTGGGACGAATCCAGTGACGGGAGTGA
GCACGAGGGCGAGCTTGGGGTGCGGAAACAGCCGCAGAAATGCGTACGGAACGCCGTCATCTCCGCTGCTCAGCGCCCCGCCGCAGCAGCTGCTTGACCGCGACGGTTTC
TGCGACCAAGGCACTGGCCTTTGTGATGCCACAAAATAG

mRNA sequence

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Protein sequence

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MKKSADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLLQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGF
CDQGTGLCDATK

Spg038144 (gene) of Sponge gourd (cylindrica) v1 genome