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Spg038232 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038232
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNucleolar protein 10
Genome locationscaffold12:42342114..42347135
RNA-Seq ExpressionSpg038232
SyntenySpg038232
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0042254 - ribosome biogenesis (biological process)
GO:0030515 - snoRNA binding (molecular function)
InterPro domainsIPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10
IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8394260.1 hypothetical protein HHK36_020467 [Tetracentron sinense]3.1e-1255.56Show/hide
Query:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLGL TQSAHPG        +L CL S S                          +RFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

KAG5567396.1 hypothetical protein RHGRI_002820 [Rhododendron griersonianum]1.3e-1050Show/hide
Query:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLGL TQSAHPG     + L+   ++                       Y    +SRFSPDDK+SRQRVLLKKRFGLLPTQ+PP KY
Subjt:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

KAG6426947.1 hypothetical protein SASPL_111186 [Salvia splendens]1.6e-1150Show/hide
Query:  KESPLGLVTQSAHPGKV--LCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLGL T+SAHP  +  + + WL L                         S + +V  +RFSPDDKYSRQR+LLKKRFGLLPTQ PPPKY
Subjt:  KESPLGLVTQSAHPGKV--LCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

VDD29115.1 unnamed protein product [Brassica oleracea]6.6e-1050Show/hide
Query:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLG  T+SAHPG+              PSC    N  FE  K   ++ L    + +RFSPDDKYS++RVLLKKRFGLLP Q  P KY
Subjt:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

XP_011651438.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]1.1e-0948.89Show/hide
Query:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLGL TQSAHP                                            +RFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

TrEMBL top hitse value%identityAlignment
A0A0A0LCV0 Nucleolar protein 103.2e-1047.83Show/hide
Query:  IPKESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        + KESPLGL TQSAHP                                            +RFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  IPKESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A0D3E3N2 Nucleolar protein 103.2e-1050Show/hide
Query:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLG  T+SAHPG+              PSC    N  FE  K   ++ L    + +RFSPDDKYS++RVLLKKRFGLLP Q  P KY
Subjt:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A1S3BHD2 Nucleolar protein 105.4e-1048.89Show/hide
Query:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLGL TQSAHP                                            +RFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Subjt:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A3P6E467 Nucleolar protein 103.2e-1050Show/hide
Query:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLG  T+SAHPG+              PSC    N  FE  K   ++ L    + +RFSPDDKYS++RVLLKKRFGLLP Q  P KY
Subjt:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

A0A7N0U8Y7 Nucleolar protein 102.9e-1151.09Show/hide
Query:  IPKESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        I KESPLG  TQSAHP      + L +C L                    +I L  ++  +RFSPDDKYSRQR LLKKRFGLLPTQQPP KY
Subjt:  IPKESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

SwissProt top hitse value%identityAlignment
Q54J26 H/ACA ribonucleoprotein complex subunit 31.7e-0571.88Show/hide
Query:  SRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        +RFS DDKYSR+R+ LKKRFGLL TQQPP ++
Subjt:  SRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

Q6BQP3 H/ACA ribonucleoprotein complex subunit NOP104.6e-0692.31Show/hide
Query:  SRFSPDDKYSRQRVLLKKRFGLLPTQ
        +RFSPDDKYSRQRV LKKRFGLLPTQ
Subjt:  SRFSPDDKYSRQRVLLKKRFGLLPTQ

Q6DRH5 H/ACA ribonucleoprotein complex subunit 32.3e-0576.67Show/hide
Query:  SRFSPDDKYSRQRVLLKKRFGLLPTQQPPP
        +RFSPDDK+SR RV +KKRFGLL TQQP P
Subjt:  SRFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein9.8e-0942.22Show/hide
Query:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLGL T+SAHP                                            +RFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

Q9V5P6 H/ACA ribonucleoprotein complex subunit 31.0e-0571.88Show/hide
Query:  SRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        +RFSP+DKYSRQR+ +KKRFGLL TQ+P P Y
Subjt:  SRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

Arabidopsis top hitse value%identityAlignment
AT2G20490.1 nucleolar RNA-binding Nop10p family protein7.0e-1042.22Show/hide
Query:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLGL T+SAHP                                            +RFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY

AT2G20490.2 nucleolar RNA-binding Nop10p family protein7.0e-1042.22Show/hide
Query:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
        KESPLGL T+SAHP                                            +RFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Subjt:  KESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCTTCAATTTTACATAAACGATAATGGTGACAAAGTCTACACCACAAAGAATGTCTCGACTTTCCACAAAGTTTGCGGTGAGGCTTTGAGCTTTGTTCCAAGAAC
TTCCAATTCTCCCATCTTTACTTCACCATATCGTGATGATCCAGGGGAAGTTCAACAGAAAGCCAATAATGTAGGGTCTTTGTTTTGTTCTTGGTCTCTTCAATATCATG
ACATGCCAGCCTCTTTAAAGTCTTCTAGGAAAGATTTTTGGAATCCTGTGAGCAAGACTCAAGAGATTGGAGAGGAGGTTACAAAAATGGAAGAATTCAATCTTATCTTG
CACTCGTCTTCCTCGTCCCTTCGTGAAGTGGAAGCACTTCATTGCTGCCATTCTGATTCTGCAATACCCAAAGAATCACCTCTAGGTTTGGTCACACAATCCGCTCATCC
AGGTAAAGTTCTTTGCATTATCTGGCTAGTATTGTGCTGTCTTGTTTCACCGTCTTGCATGATTAGCAATAACAATGATTTTGAAAGGGAGAAAGGCTACACTATAATAT
CTCTGTATCGTTATGTCTTGTTATCCCGTTTCTCTCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTCAAGAAGCGATTTGGCTTGCTACCGACGCAGCAGCCACCT
CCAAAGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATCTTCAATTTTACATAAACGATAATGGTGACAAAGTCTACACCACAAAGAATGTCTCGACTTTCCACAAAGTTTGCGGTGAGGCTTTGAGCTTTGTTCCAAGAAC
TTCCAATTCTCCCATCTTTACTTCACCATATCGTGATGATCCAGGGGAAGTTCAACAGAAAGCCAATAATGTAGGGTCTTTGTTTTGTTCTTGGTCTCTTCAATATCATG
ACATGCCAGCCTCTTTAAAGTCTTCTAGGAAAGATTTTTGGAATCCTGTGAGCAAGACTCAAGAGATTGGAGAGGAGGTTACAAAAATGGAAGAATTCAATCTTATCTTG
CACTCGTCTTCCTCGTCCCTTCGTGAAGTGGAAGCACTTCATTGCTGCCATTCTGATTCTGCAATACCCAAAGAATCACCTCTAGGTTTGGTCACACAATCCGCTCATCC
AGGTAAAGTTCTTTGCATTATCTGGCTAGTATTGTGCTGTCTTGTTTCACCGTCTTGCATGATTAGCAATAACAATGATTTTGAAAGGGAGAAAGGCTACACTATAATAT
CTCTGTATCGTTATGTCTTGTTATCCCGTTTCTCTCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTCAAGAAGCGATTTGGCTTGCTACCGACGCAGCAGCCACCT
CCAAAGTACTGA
Protein sequenceShow/hide protein sequence
MYLQFYINDNGDKVYTTKNVSTFHKVCGEALSFVPRTSNSPIFTSPYRDDPGEVQQKANNVGSLFCSWSLQYHDMPASLKSSRKDFWNPVSKTQEIGEEVTKMEEFNLIL
HSSSSSLREVEALHCCHSDSAIPKESPLGLVTQSAHPGKVLCIIWLVLCCLVSPSCMISNNNDFEREKGYTIISLYRYVLLSRFSPDDKYSRQRVLLKKRFGLLPTQQPP
PKY