; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg038236 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038236
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold12:38757119..38758943
RNA-Seq ExpressionSpg038236
SyntenySpg038236
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040575.1 putative integrase [Cucumis melo var. makuwa]4.4e-1347.14Show/hide
Query:  EHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQ---PGNLWCFSR----FELHRRNQESTGFSSKAGGSLVFSDVLSTLGCTSRIRSSIWP-RGN
        +HF+ERVK EEEEEFRGLRL+KIGKSSC ASHCRI VQ    G    FS      E+H+ NQ+    +          D+ S        +S  W  RGN
Subjt:  EHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQ---PGNLWCFSR----FELHRRNQESTGFSSKAGGSLVFSDVLSTLGCTSRIRSSIWP-RGN

Query:  RSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVV
        R SL  GELDKT              L T  VLRDNDAVV
Subjt:  RSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVV

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]9.7e-1355.66Show/hide
Query:  RNQESTGFSSKAGGSLVFSDVLSTLGC--TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVSAG------------RAP
        R+  ST FSSK G  LVFSD LS L    +++    +WPRGNRSSL TGELDKT      R S     L TLSVLRDNDAVVSAG            RAP
Subjt:  RNQESTGFSSKAGGSLVFSDVLSTLGC--TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVSAG------------RAP

Query:  LHRRTS
        LHRRTS
Subjt:  LHRRTS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]9.7e-1355.66Show/hide
Query:  RNQESTGFSSKAGGSLVFSDVLSTLGC--TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVSAG------------RAP
        R+  ST FSSK G  LVFSD LS L    +++    +WPRGNRSSL TGELDKT      R S     L TLSVLRDNDAVVSAG            RAP
Subjt:  RNQESTGFSSKAGGSLVFSDVLSTLGC--TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVSAG------------RAP

Query:  LHRRTS
        LHRRTS
Subjt:  LHRRTS

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.8e-1239.66Show/hide
Query:  HPFPLKLSEHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQPGNLWCFSRFELHRRNQESTGFSSKAGGSLVFSDVLS-------------TLGC
        H FP KL EHF+ERVK EEEEEFR ++                                    ESTGFSSK GG LVFSD LS              +  
Subjt:  HPFPLKLSEHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQPGNLWCFSRFELHRRNQESTGFSSKAGGSLVFSDVLS-------------TLGC

Query:  TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVS-----AGRAPLHRRTS---NVGCTG
            +  + PRGNRSSL TGELDKT             LL TLSVLRDNDAVV        R P   ++S   ++G TG
Subjt:  TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVS-----AGRAPLHRRTS---NVGCTG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]5.1e-3045.96Show/hide
Query:  KRKKKKASGNGQ-QTHH-RLHIPSAHFHLISHPFPLKLSEHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQPGNLWCFSRFELHRRNQESTGFS
        +R     SG GQ + HH +L +   +F    H FP KLSEHF+ERVK EEEEEFRGLRL+KIGKSSCKA+HCRI       W             STGFS
Subjt:  KRKKKKASGNGQ-QTHH-RLHIPSAHFHLISHPFPLKLSEHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQPGNLWCFSRFELHRRNQESTGFS

Query:  SKAGGSLVFSDVLSTLGCTSRIRSSIW-------------PRGNRSSLPTGELDKTPEAIWYRVST------GYVL------LLTLSVLRDNDAVVSAGR
        SK  G LVFSD LS L      +   W             PRGNRSSL TG+LDK   +I Y          G V       L TLSVLRDNDAVVS G+
Subjt:  SKAGGSLVFSDVLSTLGCTSRIRSSIW-------------PRGNRSSLPTGELDKTPEAIWYRVST------GYVL------LLTLSVLRDNDAVVSAGR

Query:  APLHRRTS------------NVGCTGRALHNVDRS
            +               NVGCTGR LH++DRS
Subjt:  APLHRRTS------------NVGCTGRALHNVDRS

TrEMBL top hitse value%identityAlignment
A0A5A7TGM2 Putative integrase2.1e-1347.14Show/hide
Query:  EHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQ---PGNLWCFSR----FELHRRNQESTGFSSKAGGSLVFSDVLSTLGCTSRIRSSIWP-RGN
        +HF+ERVK EEEEEFRGLRL+KIGKSSC ASHCRI VQ    G    FS      E+H+ NQ+    +          D+ S        +S  W  RGN
Subjt:  EHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQ---PGNLWCFSR----FELHRRNQESTGFSSKAGGSLVFSDVLSTLGCTSRIRSSIWP-RGN

Query:  RSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVV
        R SL  GELDKT              L T  VLRDNDAVV
Subjt:  RSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVV

A0A5A7VGQ5 Uncharacterized protein4.7e-1355.66Show/hide
Query:  RNQESTGFSSKAGGSLVFSDVLSTLGC--TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVSAG------------RAP
        R+  ST FSSK G  LVFSD LS L    +++    +WPRGNRSSL TGELDKT      R S     L TLSVLRDNDAVVSAG            RAP
Subjt:  RNQESTGFSSKAGGSLVFSDVLSTLGC--TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVSAG------------RAP

Query:  LHRRTS
        LHRRTS
Subjt:  LHRRTS

A0A5D3BG85 Uncharacterized protein4.7e-1355.66Show/hide
Query:  RNQESTGFSSKAGGSLVFSDVLSTLGC--TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVSAG------------RAP
        R+  ST FSSK G  LVFSD LS L    +++    +WPRGNRSSL TGELDKT      R S     L TLSVLRDNDAVVSAG            RAP
Subjt:  RNQESTGFSSKAGGSLVFSDVLSTLGC--TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVSAG------------RAP

Query:  LHRRTS
        LHRRTS
Subjt:  LHRRTS

A0A5D3BZ50 Pentatricopeptide repeat-containing protein2.3e-1239.66Show/hide
Query:  HPFPLKLSEHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQPGNLWCFSRFELHRRNQESTGFSSKAGGSLVFSDVLS-------------TLGC
        H FP KL EHF+ERVK EEEEEFR ++                                    ESTGFSSK GG LVFSD LS              +  
Subjt:  HPFPLKLSEHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQPGNLWCFSRFELHRRNQESTGFSSKAGGSLVFSDVLS-------------TLGC

Query:  TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVS-----AGRAPLHRRTS---NVGCTG
            +  + PRGNRSSL TGELDKT             LL TLSVLRDNDAVV        R P   ++S   ++G TG
Subjt:  TSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVS-----AGRAPLHRRTS---NVGCTG

A0A5D3CAC6 Uncharacterized protein2.5e-3045.96Show/hide
Query:  KRKKKKASGNGQ-QTHH-RLHIPSAHFHLISHPFPLKLSEHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQPGNLWCFSRFELHRRNQESTGFS
        +R     SG GQ + HH +L +   +F    H FP KLSEHF+ERVK EEEEEFRGLRL+KIGKSSCKA+HCRI       W             STGFS
Subjt:  KRKKKKASGNGQ-QTHH-RLHIPSAHFHLISHPFPLKLSEHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQPGNLWCFSRFELHRRNQESTGFS

Query:  SKAGGSLVFSDVLSTLGCTSRIRSSIW-------------PRGNRSSLPTGELDKTPEAIWYRVST------GYVL------LLTLSVLRDNDAVVSAGR
        SK  G LVFSD LS L      +   W             PRGNRSSL TG+LDK   +I Y          G V       L TLSVLRDNDAVVS G+
Subjt:  SKAGGSLVFSDVLSTLGCTSRIRSSIW-------------PRGNRSSLPTGELDKTPEAIWYRVST------GYVL------LLTLSVLRDNDAVVSAGR

Query:  APLHRRTS------------NVGCTGRALHNVDRS
            +               NVGCTGR LH++DRS
Subjt:  APLHRRTS------------NVGCTGRALHNVDRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAACAAAAAAAAAAAGAAAGAAAAAGAAAGCAAGTGGAAATGGACAGCAAACCCACCACCGACTACATATTCCATCAGCCCATTTCCATCTCATTTCTCATCCTTTTCC
ATTGAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAGGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATT
GCAGAATCTGTGTTCAACCTGGCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGAATCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTT
TTCTCTGATGTTTTGAGCACTCTAGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACCGACCGGGGAACTAGATAAGACTCCCGA
GGCTATATGGTACCGTGTGAGCACAGGTTATGTTCTGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGA
CTAGTAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATAG
mRNA sequenceShow/hide mRNA sequence
AGAACAAAAAAAAAAAGAAAGAAAAAGAAAGCAAGTGGAAATGGACAGCAAACCCACCACCGACTACATATTCCATCAGCCCATTTCCATCTCATTTCTCATCCTTTTCC
ATTGAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAGGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATT
GCAGAATCTGTGTTCAACCTGGCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGAATCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTT
TTCTCTGATGTTTTGAGCACTCTAGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACCGACCGGGGAACTAGATAAGACTCCCGA
GGCTATATGGTACCGTGTGAGCACAGGTTATGTTCTGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGA
CTAGTAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATAG
Protein sequenceShow/hide protein sequence
RTKKKRKKKKASGNGQQTHHRLHIPSAHFHLISHPFPLKLSEHFKERVKEEEEEEFRGLRLRKIGKSSCKASHCRICVQPGNLWCFSRFELHRRNQESTGFSSKAGGSLV
FSDVLSTLGCTSRIRSSIWPRGNRSSLPTGELDKTPEAIWYRVSTGYVLLLTLSVLRDNDAVVSAGRAPLHRRTSNVGCTGRALHNVDRS