; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg038256 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038256
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmethyl-CpG-binding domain-containing protein 13 isoform X1
Genome locationscaffold12:39075707..39082528
RNA-Seq ExpressionSpg038256
SyntenySpg038256
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574171.1 Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia]2.6e-1551.4Show/hide
Query:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND
        RLAYK R QR  D+EFQHDDIS      K  + + K   ++   +  LEP +ITNDEA+FPNATSVGESMP   P+S H            PEQSDGKND
Subjt:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND

Query:  FSQFVNS
        FS+ V +
Subjt:  FSQFVNS

KAG7013226.1 Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-1450.47Show/hide
Query:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND
        RLAYK R QR  D+EFQHDDIS      K  + + K   ++      LEP +ITN+EA+FPNATSVGESMP   P+S H            PEQSDGKND
Subjt:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND

Query:  FSQFVNS
        FS+ V +
Subjt:  FSQFVNS

XP_022944808.1 methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucurbita moschata]9.8e-1549.55Show/hide
Query:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD------------PEQSD
        RLAYK R QR  ++EFQHDDIS    + K  + + K   ++      LEP EITNDEA+FPNATSVGESMP   P+S H                PEQSD
Subjt:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD------------PEQSD

Query:  GKNDFSQFVNS
        GKNDFS+ V +
Subjt:  GKNDFSQFVNS

XP_022944809.1 methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucurbita moschata]4.4e-1551.4Show/hide
Query:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND
        RLAYK R QR  ++EFQHDDIS    + K  + + K   ++      LEP EITNDEA+FPNATSVGESMP   P+S H            PEQSDGKND
Subjt:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND

Query:  FSQFVNS
        FS+ V +
Subjt:  FSQFVNS

XP_023541412.1 methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucurbita pepo subsp. pepo]9.8e-1551.4Show/hide
Query:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND
        RLAYK R QR  D+EFQHDDIS      K  + + K   ++      LEP EITNDEA+FPNATSVGESMP   P+S H            PEQSDGKND
Subjt:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND

Query:  FSQFVNS
        F + V +
Subjt:  FSQFVNS

TrEMBL top hitse value%identityAlignment
A0A6J1FZ39 methyl-CpG-binding domain-containing protein 13 isoform X14.7e-1549.55Show/hide
Query:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD------------PEQSD
        RLAYK R QR  ++EFQHDDIS    + K  + + K   ++      LEP EITNDEA+FPNATSVGESMP   P+S H                PEQSD
Subjt:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD------------PEQSD

Query:  GKNDFSQFVNS
        GKNDFS+ V +
Subjt:  GKNDFSQFVNS

A0A6J1FZ67 methyl-CpG-binding domain-containing protein 13 isoform X22.1e-1551.4Show/hide
Query:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND
        RLAYK R QR  ++EFQHDDIS    + K  + + K   ++      LEP EITNDEA+FPNATSVGESMP   P+S H            PEQSDGKND
Subjt:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND

Query:  FSQFVNS
        FS+ V +
Subjt:  FSQFVNS

A0A6J1HUA1 methyl-CpG-binding domain-containing protein 13 isoform X22.2e-1247.66Show/hide
Query:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND
        RL YK R QR  D+EFQHDDIS      K  + + K   ++      LEP EITN+EA+FPNATSV ES+P   P+S H            PEQSD KND
Subjt:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD--------PEQSDGKND

Query:  FSQFVNS
        FS+ V +
Subjt:  FSQFVNS

A0A6J1HWM1 methyl-CpG-binding domain-containing protein 13 isoform X14.9e-1245.95Show/hide
Query:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD------------PEQSD
        RL YK R QR  D+EFQHDDIS      K  + + K   ++      LEP EITN+EA+FPNATSV ES+P   P+S H                PEQSD
Subjt:  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMP-PVPNSDHEPKD------------PEQSD

Query:  GKNDFSQFVNS
         KNDFS+ V +
Subjt:  GKNDFSQFVNS

A0A6J1J2L9 methyl-CpG-binding domain-containing protein 13-like isoform X11.4e-1145.3Show/hide
Query:  KGERLAYKLRKQ--RNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMPPV-PNSDH-------------EPK
        K  RLAYK R Q   N++IEFQHDDIS +  + K    + K   ++     S EPSEI +DEA+FP A SVGE MP + PN  H             E K
Subjt:  KGERLAYKLRKQ--RNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMPPV-PNSDH-------------EPK

Query:  DPEQSDGKNDFSQFVNS
        + EQS+GKN FS+FV++
Subjt:  DPEQSDGKNDFSQFVNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGTATCTAACAACTGGAAAGGTGAGCGGTTAGCATATAAATTAAGGAAGCAGAGAAACAACGATATTGAGTTTCAACATGATGACATCTCTGTGACTGTAAG
TGCTCTCAAGAGATGCAAGCGATTGGCAAAGCAAGGAGAGAGATTATATGGAGTGAGAGGTTCATTGGAACCCAGTGAAATAACAAATGATGAAGCTGTTTTTCCAAATG
CTACAAGTGTTGGAGAAAGCATGCCTCCTGTACCTAATTCTGATCATGAGCCCAAAGATCCAGAGCAATCAGATGGAAAGAATGATTTTTCTCAATTTGTGAATTCGAAA
CCCTCTGTCAAACGCTCCATTATTTATTCTCTTCTCTTCGCTTCACTCTCTTTTTTCTCTGAGGGAAATCCACCGTCAAAGGCTGCACTAGAAACTACATTTGAAGGGAA
GAAGAGTAAAGTGAAAGAAGAGATTGATAACCACGACCACGACCACGAGGGATTGGCAGAAGAATCTGATGTTAAAGTCATGATCAATCGTCATCGATTTGGTATATCTG
GTAGACATCTTTCAACACGTTTAAGATTGTCCCATGCAAGAATGGGAGTACAACCTTCGAACAATCCCAGGGTAGGCATGTATCAACAAGCTCAAGATTTTTCCATGCAG
GAATGTGAGCTCAACTGGAGCGTTACAACTCTTGATAAAGTTGACTTTCTTAGTTGGAATAATTGCAAAGTAGACATCTTTTACTCAAGATTTGTTCCATGCAAGCATTG
GAGCAATTGGAATGTTAGGACACTTGATACGATTGACTTTCTTGGTTGGAACAATTTCAAATTATGGAAGACACCTTTCAACAAGCTCAAAATCATCTCATGTAGGAATG
AGAGCTCAATTGGAGTGTTAGGACTCTTGATAAGGTTGACCTTCTTCAATGGAACATTCTCAAAATCTTCGTCCGCTCCGTTCAGCAGGTTGACTTCCAGGGCGTCTGAT
TCCACTTCAATGGGGGTATGCGCAGACCAAGGATCTTCTCGAGTCATGCACCACCCATCCGAGGTCTCCAATTCTTTTTTCCTCCATCCAGGCGGTGGCATCCGTGCTAA
TCTTCCAGGCGTTTTGCTTTGGTTTCTCCCAGGTTGCGTGACTCGCCAGATTCCTCAATCTCTCCGGATGTTGGCTCTTCAAGTAAGAATTTTCCCATTTGTTTATGCTG
TCTTCTATGATTTTGATATTGAAATCTGCTATTGGGGAGATTTTTGTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGTATCTAACAACTGGAAAGGTGAGCGGTTAGCATATAAATTAAGGAAGCAGAGAAACAACGATATTGAGTTTCAACATGATGACATCTCTGTGACTGTAAG
TGCTCTCAAGAGATGCAAGCGATTGGCAAAGCAAGGAGAGAGATTATATGGAGTGAGAGGTTCATTGGAACCCAGTGAAATAACAAATGATGAAGCTGTTTTTCCAAATG
CTACAAGTGTTGGAGAAAGCATGCCTCCTGTACCTAATTCTGATCATGAGCCCAAAGATCCAGAGCAATCAGATGGAAAGAATGATTTTTCTCAATTTGTGAATTCGAAA
CCCTCTGTCAAACGCTCCATTATTTATTCTCTTCTCTTCGCTTCACTCTCTTTTTTCTCTGAGGGAAATCCACCGTCAAAGGCTGCACTAGAAACTACATTTGAAGGGAA
GAAGAGTAAAGTGAAAGAAGAGATTGATAACCACGACCACGACCACGAGGGATTGGCAGAAGAATCTGATGTTAAAGTCATGATCAATCGTCATCGATTTGGTATATCTG
GTAGACATCTTTCAACACGTTTAAGATTGTCCCATGCAAGAATGGGAGTACAACCTTCGAACAATCCCAGGGTAGGCATGTATCAACAAGCTCAAGATTTTTCCATGCAG
GAATGTGAGCTCAACTGGAGCGTTACAACTCTTGATAAAGTTGACTTTCTTAGTTGGAATAATTGCAAAGTAGACATCTTTTACTCAAGATTTGTTCCATGCAAGCATTG
GAGCAATTGGAATGTTAGGACACTTGATACGATTGACTTTCTTGGTTGGAACAATTTCAAATTATGGAAGACACCTTTCAACAAGCTCAAAATCATCTCATGTAGGAATG
AGAGCTCAATTGGAGTGTTAGGACTCTTGATAAGGTTGACCTTCTTCAATGGAACATTCTCAAAATCTTCGTCCGCTCCGTTCAGCAGGTTGACTTCCAGGGCGTCTGAT
TCCACTTCAATGGGGGTATGCGCAGACCAAGGATCTTCTCGAGTCATGCACCACCCATCCGAGGTCTCCAATTCTTTTTTCCTCCATCCAGGCGGTGGCATCCGTGCTAA
TCTTCCAGGCGTTTTGCTTTGGTTTCTCCCAGGTTGCGTGACTCGCCAGATTCCTCAATCTCTCCGGATGTTGGCTCTTCAAGTAAGAATTTTCCCATTTGTTTATGCTG
TCTTCTATGATTTTGATATTGAAATCTGCTATTGGGGAGATTTTTGTTGTTGA
Protein sequenceShow/hide protein sequence
MEMVSNNWKGERLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMPPVPNSDHEPKDPEQSDGKNDFSQFVNSK
PSVKRSIIYSLLFASLSFFSEGNPPSKAALETTFEGKKSKVKEEIDNHDHDHEGLAEESDVKVMINRHRFGISGRHLSTRLRLSHARMGVQPSNNPRVGMYQQAQDFSMQ
ECELNWSVTTLDKVDFLSWNNCKVDIFYSRFVPCKHWSNWNVRTLDTIDFLGWNNFKLWKTPFNKLKIISCRNESSIGVLGLLIRLTFFNGTFSKSSSAPFSRLTSRASD
STSMGVCADQGSSRVMHHPSEVSNSFFLHPGGGIRANLPGVLLWFLPGCVTRQIPQSLRMLALQVRIFPFVYAVFYDFDIEICYWGDFCC