CuGenDBv2

Gene ID	Spg038263
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	cleavage and polyadenylation specificity factor subunit 1
Genome location	scaffold12:38842542..38843693
RNA-Seq Expression	Spg038263
Synteny	Spg038263
Gene Ontology terms	GO:0006378 - mRNA polyadenylation (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003684 - damaged DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571759.1 Cleavage and polyadenylation specificity factor subunit 1, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-31

97.37

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Query:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
        VHKPLNQVLSSMVDQD G VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
Subjt:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL

TYK07641.1 cleavage and polyadenylation specificity factor subunit 1 isoform X3 [Cucumis melo var. makuwa]

4.2e-38

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Query:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSSFAFLFFFFLVIPGDPLHHKFL
        V KPLNQVLSSMVDQDVG VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSSFAFL F  L+I GDP+  K L
Subjt:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSSFAFLFFFFLVIPGDPLHHKFL

XP_022157087.1 cleavage and polyadenylation specificity factor subunit 1 [Momordica charantia]

9.9e-32

98.68

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Query:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
        VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAM SSENALTIRVVTLL
Subjt:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL

XP_022973595.1 cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita maxima]

1.3e-31

97.37

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Query:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
        VHKPLNQVLSSMVDQD G VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
Subjt:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL

XP_023520840.1 cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita pepo subsp. pepo]

1.3e-31

97.37

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Query:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
        VHKPLNQVLSSMVDQD G VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
Subjt:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL

TrEMBL top hits

e value

%identity

Alignment

A0A5D3C6Y0 Cleavage and polyadenylation specificity factor subunit 1 isoform X3

2.0e-38

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Query:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSSFAFLFFFFLVIPGDPLHHKFL
        V KPLNQVLSSMVDQDVG VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSSFAFL F  L+I GDP+  K L
Subjt:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSSFAFLFFFFLVIPGDPLHHKFL

A0A6J1DTM4 cleavage and polyadenylation specificity factor subunit 1

4.8e-32

98.68

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Query:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
        VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAM SSENALTIRVVTLL
Subjt:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL

A0A6J1EY93 cleavage and polyadenylation specificity factor subunit 1 isoform X1

6.3e-32

97.37

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Query:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
        VHKPLNQVLSSMVDQD G VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
Subjt:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL

A0A6J1I7X9 cleavage and polyadenylation specificity factor subunit 1 isoform X1

6.3e-32

97.37

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Query:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
        VHKPLNQVLSSMVDQD G VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
Subjt:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL

A0A6J1IBS0 cleavage and polyadenylation specificity factor subunit 1 isoform X2

6.3e-32

97.37

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Query:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
        VHKPLNQVLSSMVDQD G VENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL
Subjt:  VHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLL

SwissProt top hits

e value

%identity

Alignment

Q7XWP1 Probable cleavage and polyadenylation specificity factor subunit 1

2.1e-16

59.21

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Query:  VHKPLNQVLSSMVDQD-VGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTL
        V +PLNQVLSSM DQ+ V  ++N   S D L +TY+V+EFE+RILE EK GG W+T++TI M   ENALT+R+VTL
Subjt:  VHKPLNQVLSSMVDQD-VGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTL

Q9FGR0 Cleavage and polyadenylation specificity factor subunit 1

7.2e-25

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Query:  VHKPLNQVLSSMVDQDVG-QVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSS
        V KPLNQVLSS+VDQ+ G Q++NHN+S+D+LQ+TY+VEEFEI+ILEPE+SGGPW+T+A I M +SE+ALT+RVVTLL +S
Subjt:  VHKPLNQVLSSMVDQDVG-QVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSS

Arabidopsis top hits

e value

%identity

Alignment

AT5G51660.1 cleavage and polyadenylation specificity factor 160

5.1e-26

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Query:  VHKPLNQVLSSMVDQDVG-QVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSS
        V KPLNQVLSS+VDQ+ G Q++NHN+S+D+LQ+TY+VEEFEI+ILEPE+SGGPW+T+A I M +SE+ALT+RVVTLL +S
Subjt:  VHKPLNQVLSSMVDQDVG-QVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSS

Sequences

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CDS sequence

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ATGCTGCCTAAATTTCATCTGAATGTTGGAGGGAAATTACACGGTTGCCAGGTTCATAAGCCATTGAATCAAGTGCTTTCATCAATGGTTGATCAAGATGTTGGTCAAGT
TGAGAATCATAACTTGAGTGCTGACGAGCTGCAGCAAACTTATTCAGTGGAAGAGTTTGAGATTCGGATTTTGGAACCAGAAAAATCTGGTGGCCCTTGGCAAACTAGGG
CTACAATTGCTATGCACAGTTCTGAAAATGCTCTTACCATTCGCGTTGTTACACTGTTGGTCAGTTCTTTTGCTTTTCTTTTCTTTTTCTTTTTAGTTATTCCTGGTGAT
CCTTTACACCACAAATTTCTTCTCTTTGACCAGGATAGAGTATGGTGA

mRNA sequence

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Protein sequence

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MLPKFHLNVGGKLHGCQVHKPLNQVLSSMVDQDVGQVENHNLSADELQQTYSVEEFEIRILEPEKSGGPWQTRATIAMHSSENALTIRVVTLLVSSFAFLFFFFLVIPGD
PLHHKFLLFDQDRVW

Spg038263 (gene) of Sponge gourd (cylindrica) v1 genome