; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg038375 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038375
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold1:57079856..57088383
RNA-Seq ExpressionSpg038375
SyntenySpg038375
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]1.1e-2635.2Show/hide
Query:  EGDSSSSPSQETSAHPAKSKAPKEE-------ASSNVPILRYVPLSRRKKGESPFTECS------------------------GILKK------------
        +GD+ +S     S    K +AP+ E         SN P+LRY+PLSRRKKGESPF ECS                        G  KK            
Subjt:  EGDSSSSPSQETSAHPAKSKAPKEE-------ASSNVPILRYVPLSRRKKGESPFTECS------------------------GILKK------------

Query:  ---------------------------------------------KLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMGDPEDKKYDD
                                                     KLQK+GY+IP+SRAG+GY   EPVRIT   K KV +  HITVEE  D ++ K D 
Subjt:  ---------------------------------------------KLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMGDPEDKKYDD

Query:  SQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPP-----RSVFD--RLQATYGQCKGKLKSLETDESDEMNDNN
        SQ+ SVFDRI     RLSV QR+  S +K   Q  T + TR S FQRL+ +  K     P     +S F   RL  T GQ K  +    +++S  +  + 
Subjt:  SQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPP-----RSVFD--RLQATYGQCKGKLKSLETDESDEMNDNN

Query:  GFSSTVPSRMKRKPFVLINTE
           S  PSRMKRK FV +NTE
Subjt:  GFSSTVPSRMKRKPFVLINTE

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]2.1e-1141.67Show/hide
Query:  DICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVA
        D  +++ + V+N +EGWTLVTRRKK+K+ + Q+E   +R YR K  SQ++  + K LRK   ++EE++     R+P+ LKDFFPKNF         EI +
Subjt:  DICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVA

Query:  CHAVNTCEEGDSSSSPSQET
        CH  +T EE    S+  +ET
Subjt:  CHAVNTCEEGDSSSSPSQET

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]1.7e-0841.44Show/hide
Query:  ARSKETQHEDSQTPV-IANKMLRRMTESAQLEIAAAENLMLGKFISSSQQPN-DTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASLR
        +RS+E Q  +   P  +A  +  ++++  +  I   EN  + +  S S++ N +   P++MSVM+TD  TSE+RMA++EKK++M +K VEE+D EIA L+
Subjt:  ARSKETQHEDSQTPV-IANKMLRRMTESAQLEIAAAENLMLGKFISSSQQPN-DTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASLR

Query:  NQMESRDVAES
        N +ESRD AES
Subjt:  NQMESRDVAES

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]2.4e-2630.06Show/hide
Query:  KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQK-RKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKN
        +PI++  QQK      Q++ E +E+E + W +VT +K+++   +Q + H  + + + N+  K+K R+ K +RKPK +  +++DF+  RQ +TL +F P+ 
Subjt:  KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQK-RKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKN

Query:  FLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGILKKKLQKEGYAIPSSRAGLGYNPP
        FL D  E+I E+ ACH V+  E                                                                              
Subjt:  FLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGILKKKLQKEGYAIPSSRAGLGYNPP

Query:  EPVRITRKWKVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPPRSVFDRLQ
                   VD + ++ +E+    D   +  ++ S+FDRIK  TTR SV QRL  ++ ++E Q  TS  TR S F+RLS+STSKK D P  SVF+RL+
Subjt:  EPVRITRKWKVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPPRSVFDRLQ

Query:  ATYGQCKGKLKSLETDESDEMNDNNGFSSTVPSRMKRKPFVLINTE
         T  Q + + KSL+     E ND++   S VPS MKR   V INTE
Subjt:  ATYGQCKGKLKSLETDESDEMNDNNGFSSTVPSRMKRKPFVLINTE

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-2827.94Show/hide
Query:  VAESKPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFF
        +A  K I + L+++   +  Q++   +E +DEGWT+VTRRKK+K   +Q+E  ++ NYRR N +QK K+K K  RK KLV E+++DF  +++ VTL DFF
Subjt:  VAESKPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFF

Query:  PKNFLNDDHEDIPEIVA-----------------CHAVNTCEEG----------------------------DSSS------------------------
        P  FL D  ++ P +VA                 C +++  +E                             D+ S                        
Subjt:  PKNFLNDDHEDIPEIVA-----------------CHAVNTCEEG----------------------------DSSS------------------------

Query:  ------------------------------------------------------------SPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGES
                                                                    S   E S   AKS    +E +SN PILRYVPLSRRKKGES
Subjt:  ------------------------------------------------------------SPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGES

Query:  PFTECSGILK-----------------------------------------------------------------------------KKLQKEGYAIPSS
        PF E    LK                                                                             KKL +EG+AIP S
Subjt:  PFTECSGILK-----------------------------------------------------------------------------KKLQKEGYAIPSS

Query:  RAGLGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVS
        R GLGY PPEP+RITRK   KVVD++HITV+E+   E+K+  DSQ+ S FDR+     R  V +RL    ++++    TS+  R S FQRL+++
Subjt:  RAGLGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVS

KAA0062458.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-2630.06Show/hide
Query:  KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQK-RKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKN
        +PI++  QQK      Q++ E +E+E + W +VT +K+++   +Q + H  + + + N+  K+K R+ K +RKPK +  +++DF+  RQ +TL +F P+ 
Subjt:  KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQK-RKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKN

Query:  FLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGILKKKLQKEGYAIPSSRAGLGYNPP
        FL D  E+I E+ ACH V+  E                                                                              
Subjt:  FLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGILKKKLQKEGYAIPSSRAGLGYNPP

Query:  EPVRITRKWKVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPPRSVFDRLQ
                   VD + ++ +E+    D   +  ++ S+FDRIK  TTR SV QRL  ++ ++E Q  TS  TR S F+RLS+STSKK D P  SVF+RL+
Subjt:  EPVRITRKWKVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPPRSVFDRLQ

Query:  ATYGQCKGKLKSLETDESDEMNDNNGFSSTVPSRMKRKPFVLINTE
         T  Q + + KSL+     E ND++   S VPS MKR   V INTE
Subjt:  ATYGQCKGKLKSLETDESDEMNDNNGFSSTVPSRMKRKPFVLINTE

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]3.1e-2633.96Show/hide
Query:  AVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGIL---------------------------------------
        A+N+ + G+ ++    +  A  A+  A  ++  SN P+LRY+PLSRRKKGESPFTECS  L                                       
Subjt:  AVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGIL---------------------------------------

Query:  ------------------------------------------KKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKYDDS
                                                  +KKLQK+GY+IP+SRAG+GY   EPVRIT K   KV +  HITVEE  D E+ K   S
Subjt:  ------------------------------------------KKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKYDDS

Query:  QKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPP-----RSVFDRLQATYGQCKGKLKSLETDESDEMNDNNGFS
        Q+ SVFDRI     R SV QR+  S +K   Q  T + TR S FQRL+ S  K     P     +S F RL  +  + + K     +++S  +  +    
Subjt:  QKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPP-----RSVFDRLQATYGQCKGKLKSLETDESDEMNDNNGFS

Query:  STVPSRMKRKPFVLINTE
        S  PSRMKRK FV +NTE
Subjt:  STVPSRMKRKPFVLINTE

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]1.4e-1035.91Show/hide
Query:  VEKKISMLLKMVEEKDQEIASLRNQMESR--------DVAESKPIVIW-----LQQKSAR-DICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFR
        ++KKI + L  V + +   A++  Q +SR             +P+VI+     LQ    R D  +++ + V+N +EGWTLVTRRKK+K+ + Q+E   +R
Subjt:  VEKKISMLLKMVEEKDQEIASLRNQMESR--------DVAESKPIVIW-----LQQKSAR-DICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFR

Query:  NYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQET
         YR K  SQ++  + K  RK   ++EE++     R+P+ LKDFFPKNF         EIV+CH  +T EE    S+  +ET
Subjt:  NYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQET

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]6.4e-0840.54Show/hide
Query:  ARSKETQHEDSQTPV-IANKMLRRMTESAQLEIAAAENLMLGKFISSSQQPN-DTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASLR
        +RS+E Q  +   P  +A  + +++++  +  I   EN  + +  S S++ N +   P++MSVM+TD  TSE+RM  +EKK++M +K VEE+D EIA L+
Subjt:  ARSKETQHEDSQTPV-IANKMLRRMTESAQLEIAAAENLMLGKFISSSQQPN-DTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASLR

Query:  NQMESRDVAES
        N +ESRD AES
Subjt:  NQMESRDVAES

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H1.5e-2633.96Show/hide
Query:  AVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGIL---------------------------------------
        A+N+ + G+ ++    +  A  A+  A  ++  SN P+LRY+PLSRRKKGESPFTECS  L                                       
Subjt:  AVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGIL---------------------------------------

Query:  ------------------------------------------KKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKYDDS
                                                  +KKLQK+GY+IP+SRAG+GY   EPVRIT K   KV +  HITVEE  D E+ K   S
Subjt:  ------------------------------------------KKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKYDDS

Query:  QKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPP-----RSVFDRLQATYGQCKGKLKSLETDESDEMNDNNGFS
        Q+ SVFDRI     R SV QR+  S +K   Q  T + TR S FQRL+ S  K     P     +S F RL  +  + + K     +++S  +  +    
Subjt:  QKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPP-----RSVFDRLQATYGQCKGKLKSLETDESDEMNDNNGFS

Query:  STVPSRMKRKPFVLINTE
        S  PSRMKRK FV +NTE
Subjt:  STVPSRMKRKPFVLINTE

A0A5A7TZU9 Ribonuclease H6.7e-1135.91Show/hide
Query:  VEKKISMLLKMVEEKDQEIASLRNQMESR--------DVAESKPIVIW-----LQQKSAR-DICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFR
        ++KKI + L  V + +   A++  Q +SR             +P+VI+     LQ    R D  +++ + V+N +EGWTLVTRRKK+K+ + Q+E   +R
Subjt:  VEKKISMLLKMVEEKDQEIASLRNQMESR--------DVAESKPIVIW-----LQQKSAR-DICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFR

Query:  NYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQET
         YR K  SQ++  + K  RK   ++EE++     R+P+ LKDFFPKNF         EIV+CH  +T EE    S+  +ET
Subjt:  NYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQET

A0A5A7TZU9 Ribonuclease H4.3e-1043.24Show/hide
Query:  ARSKETQHEDSQTPV-IANKMLRRMTESAQLEIAAAENLMLGKFISSSQQPN-DTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASLR
        +RS+E Q  +   P  +A  +  ++++  +  I   EN  + +  S S++ N +   P++MSVM+TD  TSE+RMAE+EKK++ML+K VEE+D EIA L+
Subjt:  ARSKETQHEDSQTPV-IANKMLRRMTESAQLEIAAAENLMLGKFISSSQQPN-DTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASLR

Query:  NQMESRDVAES
        N +ESRD AES
Subjt:  NQMESRDVAES

A0A5A7UJR2 Reverse transcriptase5.1e-2735.2Show/hide
Query:  EGDSSSSPSQETSAHPAKSKAPKEE-------ASSNVPILRYVPLSRRKKGESPFTECS------------------------GILKK------------
        +GD+ +S     S    K +AP+ E         SN P+LRY+PLSRRKKGESPF ECS                        G  KK            
Subjt:  EGDSSSSPSQETSAHPAKSKAPKEE-------ASSNVPILRYVPLSRRKKGESPFTECS------------------------GILKK------------

Query:  ---------------------------------------------KLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMGDPEDKKYDD
                                                     KLQK+GY+IP+SRAG+GY   EPVRIT   K KV +  HITVEE  D ++ K D 
Subjt:  ---------------------------------------------KLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMGDPEDKKYDD

Query:  SQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPP-----RSVFD--RLQATYGQCKGKLKSLETDESDEMNDNN
        SQ+ SVFDRI     RLSV QR+  S +K   Q  T + TR S FQRL+ +  K     P     +S F   RL  T GQ K  +    +++S  +  + 
Subjt:  SQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPP-----RSVFD--RLQATYGQCKGKLKSLETDESDEMNDNN

Query:  GFSSTVPSRMKRKPFVLINTE
           S  PSRMKRK FV +NTE
Subjt:  GFSSTVPSRMKRKPFVLINTE

A0A5A7UJR2 Reverse transcriptase1.0e-1141.67Show/hide
Query:  DICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVA
        D  +++ + V+N +EGWTLVTRRKK+K+ + Q+E   +R YR K  SQ++  + K LRK   ++EE++     R+P+ LKDFFPKNF         EI +
Subjt:  DICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVA

Query:  CHAVNTCEEGDSSSSPSQET
        CH  +T EE    S+  +ET
Subjt:  CHAVNTCEEGDSSSSPSQET

A0A5A7UJR2 Reverse transcriptase8.2e-0941.44Show/hide
Query:  ARSKETQHEDSQTPV-IANKMLRRMTESAQLEIAAAENLMLGKFISSSQQPN-DTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASLR
        +RS+E Q  +   P  +A  +  ++++  +  I   EN  + +  S S++ N +   P++MSVM+TD  TSE+RMA++EKK++M +K VEE+D EIA L+
Subjt:  ARSKETQHEDSQTPV-IANKMLRRMTESAQLEIAAAENLMLGKFISSSQQPN-DTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASLR

Query:  NQMESRDVAES
        N +ESRD AES
Subjt:  NQMESRDVAES

A0A5A7UJR2 Reverse transcriptase1.1e-2630.06Show/hide
Query:  KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQK-RKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKN
        +PI++  QQK      Q++ E +E+E + W +VT +K+++   +Q + H  + + + N+  K+K R+ K +RKPK +  +++DF+  RQ +TL +F P+ 
Subjt:  KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQK-RKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKN

Query:  FLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGILKKKLQKEGYAIPSSRAGLGYNPP
        FL D  E+I E+ ACH V+  E                                                                              
Subjt:  FLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGILKKKLQKEGYAIPSSRAGLGYNPP

Query:  EPVRITRKWKVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPPRSVFDRLQ
                   VD + ++ +E+    D   +  ++ S+FDRIK  TTR SV QRL  ++ ++E Q  TS  TR S F+RLS+STSKK D P  SVF+RL+
Subjt:  EPVRITRKWKVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPPRSVFDRLQ

Query:  ATYGQCKGKLKSLETDESDEMNDNNGFSSTVPSRMKRKPFVLINTE
         T  Q + + KSL+     E ND++   S VPS MKR   V INTE
Subjt:  ATYGQCKGKLKSLETDESDEMNDNNGFSSTVPSRMKRKPFVLINTE

A0A5A7V4E9 Retrotransposon gag protein1.1e-2630.06Show/hide
Query:  KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQK-RKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKN
        +PI++  QQK      Q++ E +E+E + W +VT +K+++   +Q + H  + + + N+  K+K R+ K +RKPK +  +++DF+  RQ +TL +F P+ 
Subjt:  KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQK-RKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKN

Query:  FLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGILKKKLQKEGYAIPSSRAGLGYNPP
        FL D  E+I E+ ACH V+  E                                                                              
Subjt:  FLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECSGILKKKLQKEGYAIPSSRAGLGYNPP

Query:  EPVRITRKWKVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPPRSVFDRLQ
                   VD + ++ +E+    D   +  ++ S+FDRIK  TTR SV QRL  ++ ++E Q  TS  TR S F+RLS+STSKK D P  SVF+RL+
Subjt:  EPVRITRKWKVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVSTSKKVDEPPRSVFDRLQ

Query:  ATYGQCKGKLKSLETDESDEMNDNNGFSSTVPSRMKRKPFVLINTE
         T  Q + + KSL+     E ND++   S VPS MKR   V INTE
Subjt:  ATYGQCKGKLKSLETDESDEMNDNNGFSSTVPSRMKRKPFVLINTE

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.1e-2827.94Show/hide
Query:  VAESKPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFF
        +A  K I + L+++   +  Q++   +E +DEGWT+VTRRKK+K   +Q+E  ++ NYRR N +QK K+K K  RK KLV E+++DF  +++ VTL DFF
Subjt:  VAESKPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFF

Query:  PKNFLNDDHEDIPEIVA-----------------CHAVNTCEEG----------------------------DSSS------------------------
        P  FL D  ++ P +VA                 C +++  +E                             D+ S                        
Subjt:  PKNFLNDDHEDIPEIVA-----------------CHAVNTCEEG----------------------------DSSS------------------------

Query:  ------------------------------------------------------------SPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGES
                                                                    S   E S   AKS    +E +SN PILRYVPLSRRKKGES
Subjt:  ------------------------------------------------------------SPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRRKKGES

Query:  PFTECSGILK-----------------------------------------------------------------------------KKLQKEGYAIPSS
        PF E    LK                                                                             KKL +EG+AIP S
Subjt:  PFTECSGILK-----------------------------------------------------------------------------KKLQKEGYAIPSS

Query:  RAGLGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVS
        R GLGY PPEP+RITRK   KVVD++HITV+E+   E+K+  DSQ+ S FDR+     R  V +RL    ++++    TS+  R S FQRL+++
Subjt:  RAGLGYNPPEPVRITRKW--KVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTRCSVFQRLSVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGCCCAGATCCGGGTTCGTGCCGCCGGAACCCGTACATCCGCCAGAATCGCCTTCCTTTTCCCTTCTTCTCGTTTTCTTTTTTCTTCTTTTCGTTACACTTTTCT
CGCAAGATCTGGCACGCGACTTCTTCTTCTGAATTGGTATGGGTCTTCTTCTTCTTCTTCTGAGTTGGCTCGCTCCAAGGAAACCCAACATGAAGACAGCCAAACTCCTG
TCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTTCTTCTCAGCAACCAAAT
GACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGA
AGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAAACCGATTGTTATTTGGCTTCAGCAAAAATCTGCAAGAGACATCT
GCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTACGTTCAAAGAGAGCCTCACATGTTCCGA
AACTACAGGAGAAAGAACATGTCACAAAAACAGAAAAGAAAGATAAAAGGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTATGTCTCGACAACC
AGTGACCCTTAAAGATTTCTTCCCGAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGAGATAGTCGCATGTCATGCTGTCAATACGTGCGAAGAAGGCGATTCTT
CCTCAAGTCCATCTCAGGAAACATCCGCTCACCCTGCAAAATCGAAAGCTCCAAAGGAAGAGGCATCGTCAAACGTCCCTATATTACGCTACGTTCCTTTATCTCGACGC
AAGAAAGGGGAATCACCATTCACAGAATGTTCAGGAATTTTGAAGAAGAAGCTCCAGAAAGAAGGTTATGCCATACCATCCTCGAGAGCCGGACTAGGGTACAATCCCCC
AGAGCCAGTTCGTATAACCAGAAAATGGAAAGTTGTAGATGCACATCATATAACAGTAGAAGAGATGGGCGATCCAGAAGATAAAAAGTATGATGATAGCCAGAAAATCT
CTGTCTTCGATCGCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTCATCTTCGAAAAAGGAAGGTCAGAGCAAAACTTCTACTCCTACCCGA
TGTTCAGTGTTTCAGCGTTTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCGCCAAGATCCGTGTTCGATCGCCTTCAAGCAACCTATGGCCAATGCAAGGGAAAGTT
GAAAAGTCTTGAAACAGATGAATCCGACGAGATGAATGACAACAACGGATTTTCCAGTACTGTTCCTTCACGGATGAAGAGAAAACCTTTTGTTCTCATAAATACAGAAG
TGAATTATGATGAGAAACAAGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGCCCAGATCCGGGTTCGTGCCGCCGGAACCCGTACATCCGCCAGAATCGCCTTCCTTTTCCCTTCTTCTCGTTTTCTTTTTTCTTCTTTTCGTTACACTTTTCT
CGCAAGATCTGGCACGCGACTTCTTCTTCTGAATTGGTATGGGTCTTCTTCTTCTTCTTCTGAGTTGGCTCGCTCCAAGGAAACCCAACATGAAGACAGCCAAACTCCTG
TCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTTCTTCTCAGCAACCAAAT
GACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGA
AGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAAACCGATTGTTATTTGGCTTCAGCAAAAATCTGCAAGAGACATCT
GCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTACGTTCAAAGAGAGCCTCACATGTTCCGA
AACTACAGGAGAAAGAACATGTCACAAAAACAGAAAAGAAAGATAAAAGGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTATGTCTCGACAACC
AGTGACCCTTAAAGATTTCTTCCCGAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGAGATAGTCGCATGTCATGCTGTCAATACGTGCGAAGAAGGCGATTCTT
CCTCAAGTCCATCTCAGGAAACATCCGCTCACCCTGCAAAATCGAAAGCTCCAAAGGAAGAGGCATCGTCAAACGTCCCTATATTACGCTACGTTCCTTTATCTCGACGC
AAGAAAGGGGAATCACCATTCACAGAATGTTCAGGAATTTTGAAGAAGAAGCTCCAGAAAGAAGGTTATGCCATACCATCCTCGAGAGCCGGACTAGGGTACAATCCCCC
AGAGCCAGTTCGTATAACCAGAAAATGGAAAGTTGTAGATGCACATCATATAACAGTAGAAGAGATGGGCGATCCAGAAGATAAAAAGTATGATGATAGCCAGAAAATCT
CTGTCTTCGATCGCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTCATCTTCGAAAAAGGAAGGTCAGAGCAAAACTTCTACTCCTACCCGA
TGTTCAGTGTTTCAGCGTTTGAGTGTGTCTACATCGAAGAAAGTAGATGAACCGCCAAGATCCGTGTTCGATCGCCTTCAAGCAACCTATGGCCAATGCAAGGGAAAGTT
GAAAAGTCTTGAAACAGATGAATCCGACGAGATGAATGACAACAACGGATTTTCCAGTACTGTTCCTTCACGGATGAAGAGAAAACCTTTTGTTCTCATAAATACAGAAG
TGAATTATGATGAGAAACAAGTCTAA
Protein sequenceShow/hide protein sequence
MGAQIRVRAAGTRTSARIAFLFPSSRFLFSSFRYTFLARSGTRLLLLNWYGSSSSSSELARSKETQHEDSQTPVIANKMLRRMTESAQLEIAAAENLMLGKFISSSQQPN
DTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMVEEKDQEIASLRNQMESRDVAESKPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFR
NYRRKNMSQKQKRKIKGLRKPKLVVEENQDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQETSAHPAKSKAPKEEASSNVPILRYVPLSRR
KKGESPFTECSGILKKKLQKEGYAIPSSRAGLGYNPPEPVRITRKWKVVDAHHITVEEMGDPEDKKYDDSQKISVFDRIKAPTTRLSVHQRLKYSSSKKEGQSKTSTPTR
CSVFQRLSVSTSKKVDEPPRSVFDRLQATYGQCKGKLKSLETDESDEMNDNNGFSSTVPSRMKRKPFVLINTEVNYDEKQV