; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg038386 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038386
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionAlba DNA/RNA-binding protein
Genome locationscaffold1:57093075..57101174
RNA-Seq ExpressionSpg038386
SyntenySpg038386
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G07030.1 Alba DNA/RNA-binding protein5.9e-0444.26Show/hide
Query:  EEKHVREIVLKAMGQAISKAVAIAEILK--------FVGVVTFGVLEV-KTKQNGNYPVNL
        +EK V++IVLKAMGQAISK VAI+EILK         + + +  + +V +  + G +PV L
Subjt:  EEKHVREIVLKAMGQAISKAVAIAEILK--------FVGVVTFGVLEV-KTKQNGNYPVNL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACATCACTGTCCCATTTCCTTTTGAGATCAGGAAGGGGGATGTTGATGTCAATAGGTTAGGTCTTTCAAGACGAAGAAGACATTTATCAAGAGGACTAGGGGC
AGGGGCCAATGAGGTGAATGTCACGACCCTAAAACTTGGACACTCGATGGGTGGAGCGGTCCTTGAACCACCCAAGTCGAGGAGTGTGCGTGGGCGGCACACAGGTGAAG
CGCAAGCACGCGCAGGTGGCGCGCAGCTGGGCGCACTGGCGCACAGAGGGGCGCCAGACGCTGCCCAGCGCCAGGCAGGCGCAAGGCCGCACGCACGCGCACGGCAGGCA
GGGGCGCGCGCGCGCGGGCGGCAGGCAGCGTGCGCAAGGGGCGCGCGCACGGACGACTGGAAGCGCGCGCAGGCTGGCGCGCAGACGGACGGGGCGTGCGCGCGCGATCG
TGCGCGCGGGTCACGAGCAGCGCGCGCGCGCGCGACACAGACAGTGCGCGCGCGCGGGGCTGGCGGCAAGCGCCCTGCGCGCCATTTGGCGGGAAACGCTGTTTTGGCGG
GAAACGCGCGGGAAGCTCTTTTTGGCTACGAATTGGGTTCTTCTGATTCGTCCAGGCATGGGGATGACTTTGCAATTCGAAGGATCAACTCTACTCCAAATAAAGAAGGT
TTGGAGATGCATTTTGTGAGGCCAATTGTGGTTGAAGAACACCCAAGAAGGCGCATTGACCAAACACTTGTCTTGAATGTGTGTTCTTGTATTTTGGAGGGAAAAGCTTT
GGGCGATCGTGTGACCCGACTAGAGGAATGTGTGGGCAATGTCTCGGATGAGGATTCCATTCCCTTGGCCGAGACACTCCACCTTCATGGGGGACGGCTCCAAGCGTTAG
AAACAGCACTTGGAGGCCTCATGACAGAAATGAAAGATCGGTTGGAATCCTTCCAAGAAGTCAAAGACAAGTTGTTCCACTCTTCAATCCATTCATCTTCATCCATGTTA
GAGATCTTAGACGACAGAGATTCAGAACAAAGAACAACAAAAACTGAAGGAACAGTCACGGACGTAAGGGGAAAGCTCGCACTAATGGGGAGAAAAAGCTCTTGCTTCAT
GGAGAGAATCTTGGAGGATTCTGAAATCCTGAGCACTTTCTACCACTTCTTTTACGAGACGATTTTCATTTGCAAAGGTTTGCACCTTGTGAATTGGGAGGAAAAACATG
TCAGAGAGATCGTCTTAAAAGCAATGGGACAAGCCATCAGTAAAGCAGTGGCTATTGCAGAAATTTTAAAGTTTGTTGGTGTGGTAACTTTTGGAGTTCTTGAGGTCAAA
ACAAAGCAAAATGGTAATTACCCTGTGAATCTACTTGAAATAGCATTCATAAGTGGTAATTACCTCGTGGTTGTGGCTGAACTTGTTAATAGTACCTTGTTTTCATATTG
GGAAAACCTCTTGAAAAGTGATCGTCTGGTGGTTTATTTTCCATGTACTATCAATATGCATGCTCTTTTAGGATTGACTGTCGAGTGTGTGTTTTCATCTTTTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGACATCACTGTCCCATTTCCTTTTGAGATCAGGAAGGGGGATGTTGATGTCAATAGGTTAGGTCTTTCAAGACGAAGAAGACATTTATCAAGAGGACTAGGGGC
AGGGGCCAATGAGGTGAATGTCACGACCCTAAAACTTGGACACTCGATGGGTGGAGCGGTCCTTGAACCACCCAAGTCGAGGAGTGTGCGTGGGCGGCACACAGGTGAAG
CGCAAGCACGCGCAGGTGGCGCGCAGCTGGGCGCACTGGCGCACAGAGGGGCGCCAGACGCTGCCCAGCGCCAGGCAGGCGCAAGGCCGCACGCACGCGCACGGCAGGCA
GGGGCGCGCGCGCGCGGGCGGCAGGCAGCGTGCGCAAGGGGCGCGCGCACGGACGACTGGAAGCGCGCGCAGGCTGGCGCGCAGACGGACGGGGCGTGCGCGCGCGATCG
TGCGCGCGGGTCACGAGCAGCGCGCGCGCGCGCGACACAGACAGTGCGCGCGCGCGGGGCTGGCGGCAAGCGCCCTGCGCGCCATTTGGCGGGAAACGCTGTTTTGGCGG
GAAACGCGCGGGAAGCTCTTTTTGGCTACGAATTGGGTTCTTCTGATTCGTCCAGGCATGGGGATGACTTTGCAATTCGAAGGATCAACTCTACTCCAAATAAAGAAGGT
TTGGAGATGCATTTTGTGAGGCCAATTGTGGTTGAAGAACACCCAAGAAGGCGCATTGACCAAACACTTGTCTTGAATGTGTGTTCTTGTATTTTGGAGGGAAAAGCTTT
GGGCGATCGTGTGACCCGACTAGAGGAATGTGTGGGCAATGTCTCGGATGAGGATTCCATTCCCTTGGCCGAGACACTCCACCTTCATGGGGGACGGCTCCAAGCGTTAG
AAACAGCACTTGGAGGCCTCATGACAGAAATGAAAGATCGGTTGGAATCCTTCCAAGAAGTCAAAGACAAGTTGTTCCACTCTTCAATCCATTCATCTTCATCCATGTTA
GAGATCTTAGACGACAGAGATTCAGAACAAAGAACAACAAAAACTGAAGGAACAGTCACGGACGTAAGGGGAAAGCTCGCACTAATGGGGAGAAAAAGCTCTTGCTTCAT
GGAGAGAATCTTGGAGGATTCTGAAATCCTGAGCACTTTCTACCACTTCTTTTACGAGACGATTTTCATTTGCAAAGGTTTGCACCTTGTGAATTGGGAGGAAAAACATG
TCAGAGAGATCGTCTTAAAAGCAATGGGACAAGCCATCAGTAAAGCAGTGGCTATTGCAGAAATTTTAAAGTTTGTTGGTGTGGTAACTTTTGGAGTTCTTGAGGTCAAA
ACAAAGCAAAATGGTAATTACCCTGTGAATCTACTTGAAATAGCATTCATAAGTGGTAATTACCTCGTGGTTGTGGCTGAACTTGTTAATAGTACCTTGTTTTCATATTG
GGAAAACCTCTTGAAAAGTGATCGTCTGGTGGTTTATTTTCCATGTACTATCAATATGCATGCTCTTTTAGGATTGACTGTCGAGTGTGTGTTTTCATCTTTTGGCTGA
Protein sequenceShow/hide protein sequence
MDDITVPFPFEIRKGDVDVNRLGLSRRRRHLSRGLGAGANEVNVTTLKLGHSMGGAVLEPPKSRSVRGRHTGEAQARAGGAQLGALAHRGAPDAAQRQAGARPHARARQA
GARARGRQAACARGARTDDWKRAQAGAQTDGACARDRARGSRAARARATQTVRARGAGGKRPARHLAGNAVLAGNAREALFGYELGSSDSSRHGDDFAIRRINSTPNKEG
LEMHFVRPIVVEEHPRRRIDQTLVLNVCSCILEGKALGDRVTRLEECVGNVSDEDSIPLAETLHLHGGRLQALETALGGLMTEMKDRLESFQEVKDKLFHSSIHSSSSML
EILDDRDSEQRTTKTEGTVTDVRGKLALMGRKSSCFMERILEDSEILSTFYHFFYETIFICKGLHLVNWEEKHVREIVLKAMGQAISKAVAIAEILKFVGVVTFGVLEVK
TKQNGNYPVNLLEIAFISGNYLVVVAELVNSTLFSYWENLLKSDRLVVYFPCTINMHALLGLTVECVFSSFG