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Spg038404 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038404
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNuclear cap-binding protein subunit 2
Genome locationscaffold12:2140170..2141057
RNA-Seq ExpressionSpg038404
SyntenySpg038404
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057846.1 uncharacterized protein E6C27_scaffold274G001330 [Cucumis melo var. makuwa]1.8e-0546.97Show/hide
Query:  MGRRDGV---GASVLLTGSLAEEDLDHILWSCDYAHVVWGRFGHTFRLQGMSFVDQREMIEEFLLH
        +GR +G+   G  +L     AEEDLDH+ W C YA VVW  F   F +   SF   R  IEEFLLH
Subjt:  MGRRDGV---GASVLLTGSLAEEDLDHILWSCDYAHVVWGRFGHTFRLQGMSFVDQREMIEEFLLH
TrEMBL top hitse value%identityAlignment
A0A5A7UUK8 Uncharacterized protein8.6e-0646.97Show/hide
Query:  MGRRDGV---GASVLLTGSLAEEDLDHILWSCDYAHVVWGRFGHTFRLQGMSFVDQREMIEEFLLH
        +GR +G+   G  +L     AEEDLDH+ W C YA VVW  F   F +   SF   R  IEEFLLH
Subjt:  MGRRDGV---GASVLLTGSLAEEDLDHILWSCDYAHVVWGRFGHTFRLQGMSFVDQREMIEEFLLH
A0A5D3BB82 Nuclear cap-binding protein subunit 26.2e-0440Show/hide
Query:  LISLIEVFEFKMGRRDGVGASVLLTGSLAEEDLDHILWSCDYAHVVWGRFGHTFRLQGMSFV-DQREMIEEFLLH
        L+SL++   F +GRRD     +       EEDLDH+LW C Y   VW  F   F ++  S   D R MI +FL+H
Subjt:  LISLIEVFEFKMGRRDGVGASVLLTGSLAEEDLDHILWSCDYAHVVWGRFGHTFRLQGMSFV-DQREMIEEFLLH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGACGTTATGTCTCTTATCTCTTTGATTGAGGTGTTTGAGTTCAAAATGGGGAGGAGAGACGGTGTTGGAGCCTCAGTCCTTCTGACGGGTTCTCTTGCGGAGGA
AGACCTGGATCACATTCTTTGGAGTTGTGACTATGCGCATGTAGTGTGGGGCCGTTTCGGTCATACTTTTAGGTTGCAGGGGATGAGTTTTGTTGATCAAAGGGAGATGA
TCGAGGAGTTCCTCCTCCATCCGCTGGACTTCATCCATGAACTTAAATTGTGGCAAGAGTTTGTGGAGTATGTGGTCATAGAGGAATGGCTTGATACATGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGACGTTATGTCTCTTATCTCTTTGATTGAGGTGTTTGAGTTCAAAATGGGGAGGAGAGACGGTGTTGGAGCCTCAGTCCTTCTGACGGGTTCTCTTGCGGAGGA
AGACCTGGATCACATTCTTTGGAGTTGTGACTATGCGCATGTAGTGTGGGGCCGTTTCGGTCATACTTTTAGGTTGCAGGGGATGAGTTTTGTTGATCAAAGGGAGATGA
TCGAGGAGTTCCTCCTCCATCCGCTGGACTTCATCCATGAACTTAAATTGTGGCAAGAGTTTGTGGAGTATGTGGTCATAGAGGAATGGCTTGATACATGGTGA
Protein sequenceShow/hide protein sequence
MTDVMSLISLIEVFEFKMGRRDGVGASVLLTGSLAEEDLDHILWSCDYAHVVWGRFGHTFRLQGMSFVDQREMIEEFLLHPLDFIHELKLWQEFVEYVVIEEWLDTW