CuGenDBv2

Gene ID	Spg038457
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	arabinogalactan peptide 23-like
Genome location	scaffold12:5554869..5555350
RNA-Seq Expression	Spg038457
Synteny	Spg038457
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044702 - Arabinogalactan protein 23/40

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7018086.1 hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-12

92.45

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV
        MKKIACAVLFAAATVSAVVA DEA APAPGPSSGAAA LPAIGS+IGASLLSV
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV

KAG7019275.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-11

88.68

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV
        MKKI CA+LFAAATVSAVVA DEAAAPAPGP+SGA A LPAIGSLIGASLLSV
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV

KAG7036581.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-10

86.79

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV
        MKKI CA+LFAAATVSAVVA DEAAAPAPGP+SGA A LPAI SLIGASLLSV
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV

XP_022983304.1 arabinogalactan peptide 23-like [Cucurbita maxima]

1.0e-11

92.45

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV
        MKKIACAVLFAAATVSAVVA DEA APAPGPSSGAAA LPAIGS IGASLLSV
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV

XP_038905644.1 arabinogalactan protein 23-like [Benincasa hispida]

6.8e-11

88.68

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV
        MKKIACAVLFAAATVSA VA DEA APAPGPSSGAA  LPAIGS+IGASLLSV
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9U8 Uncharacterized protein

2.8e-10

84.62

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLS
        MKKIACAVLFAAATV+AVVA DEA APAPGPSSGA   +PAIGSL+GASLLS
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLS

A0A5A7U280 Arabinogalactan peptide 23

9.5e-11

84.62

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLS
        MKKIACA+LFAAATVSA VA+D+A APAPGPSSGAA  LPAIGSL+GASLLS
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLS

A0A6J1HQG2 arabinogalactan peptide 23-like

1.4e-09

81.13

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV
        MKKI CAVLFAAATV+A VAQ+EA+APAPGP+S A   LPAIGSLIGASLLSV
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV

A0A6J1J6Y9 arabinogalactan peptide 23-like

5.1e-12

92.45

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV
        MKKIACAVLFAAATVSAVVA DEA APAPGPSSGAAA LPAIGS IGASLLSV
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV

A0A6J1K873 arabinogalactan peptide 23-like

9.5e-11

84.91

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV
        M KI CA+LFAAATVSAVVA DEAAAPAPGP+SGA   LPAIGSLIGASLLSV
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSV

SwissProt top hits

e value

%identity

Alignment

Q8S2W4 Arabinogalactan protein 23

4.6e-10

65.45

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSVLT
        MKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A+LPA+GSL+GASL+S+ +
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSVLT

Arabidopsis top hits

e value

%identity

Alignment

AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)

1.3e-07

62.96

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGP-SSGAAASLPAIGSLIGASLLSV
        MKKIAC V+FAAA+++AV+A  E  APAPGP +SGA+ ++PA+GSL+GASL+S+
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGP-SSGAAASLPAIGSLIGASLLSV

AT3G57690.1 arabinogalactan protein 23

3.2e-11

65.45

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Query:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSVLT
        MKKIAC VLFAAA+++AV+A +E  APAPGP+S A+A+LPA+GSL+GASL+S+ +
Subjt:  MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSVLT

Sequences

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CDS sequence

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ATGAAGAAGATTGCCTGCGCCGTCCTCTTCGCCGCCGCAACCGTCAGCGCCGTCGTGGCTCAGGATGAGGCGGCGGCTCCGGCACCTGGACCAAGCAGCGGCGCCGCTGC
CAGCCTCCCGGCAATCGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCTTGACAAGTTCGATCTCAGAGTTCTACTATTCAAGCATAGTTTAA

mRNA sequence

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Protein sequence

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MKKIACAVLFAAATVSAVVAQDEAAAPAPGPSSGAAASLPAIGSLIGASLLSVLTSSISEFYYSSIV

Spg038457 (gene) of Sponge gourd (cylindrica) v1 genome