; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg038493 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038493
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRRM domain-containing protein
Genome locationscaffold12:809408..809920
RNA-Seq ExpressionSpg038493
SyntenySpg038493
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042597.1 putative RNA-binding protein 18 [Cucumis melo var. makuwa]3.1e-5269.41Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        +FSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE                         +AKLAKEKMHGKLACGRPLVVRLASEK  +NT ++TS+
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS
        AA ES K RLGGS     +YGQ+TRSDKIAAIKNKLRALEGGGESSSVKK KQD++S + +IDKS LKTS
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS

XP_008437528.1 PREDICTED: probable RNA-binding protein 18 [Cucumis melo]3.1e-5269.41Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        +FSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE                         +AKLAKEKMHGKLACGRPLVVRLASEK  +NT ++TS+
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS
        AA ES K RLGGS     +YGQ+TRSDKIAAIKNKLRALEGGGESSSVKK KQD++S + +IDKS LKTS
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS

XP_022157798.1 probable RNA-binding protein 18 isoform X1 [Momordica charantia]6.9e-5272.09Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE                         +AKLAKEKMHGKLACGRPLVVRLASEK  I+TT + SR
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHVSCRGNIDKSSLKTS
        AAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS  VKKQKQD++SCR NIDK  LKTS
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHVSCRGNIDKSSLKTS

XP_022157813.1 probable RNA-binding protein 18 isoform X3 [Momordica charantia]6.9e-5272.09Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE                         +AKLAKEKMHGKLACGRPLVVRLASEK  I+TT + SR
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHVSCRGNIDKSSLKTS
        AAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS  VKKQKQD++SCR NIDK  LKTS
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHVSCRGNIDKSSLKTS

XP_031741097.1 probable RNA-binding protein 18 isoform X1 [Cucumis sativus]5.8e-6781.76Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        +FSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSC+VY  IASVKQ LIFACKVSMQ+AKLAKEKMHGKLACGRPLVVRLASEK   NTT++TSR
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS
         A ES K RLGGS     +YGQ+TRSDKIAAIKNKLRALEGGGESSSVKK KQD++S + + DKSSLK S
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS

TrEMBL top hitse value%identityAlignment
A0A1S3ATX2 probable RNA-binding protein 181.5e-5269.41Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        +FSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE                         +AKLAKEKMHGKLACGRPLVVRLASEK  +NT ++TS+
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS
        AA ES K RLGGS     +YGQ+TRSDKIAAIKNKLRALEGGGESSSVKK KQD++S + +IDKS LKTS
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS

A0A5A7TLJ6 Putative RNA-binding protein 181.5e-5269.41Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        +FSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE                         +AKLAKEKMHGKLACGRPLVVRLASEK  +NT ++TS+
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS
        AA ES K RLGGS     +YGQ+TRSDKIAAIKNKLRALEGGGESSSVKK KQD++S + +IDKS LKTS
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS

A0A6J1DUC5 probable RNA-binding protein 18 isoform X13.3e-5272.09Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE                         +AKLAKEKMHGKLACGRPLVVRLASEK  I+TT + SR
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHVSCRGNIDKSSLKTS
        AAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS  VKKQKQD++SCR NIDK  LKTS
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHVSCRGNIDKSSLKTS

A0A6J1DUD9 probable RNA-binding protein 18 isoform X33.3e-5272.09Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE                         +AKLAKEKMHGKLACGRPLVVRLASEK  I+TT + SR
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHVSCRGNIDKSSLKTS
        AAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS  VKKQKQD++SCR NIDK  LKTS
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHVSCRGNIDKSSLKTS

A0A6J1DXL8 probable RNA-binding protein 18 isoform X23.3e-5272.09Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKE                         +AKLAKEKMHGKLACGRPLVVRLASEK  I+TT + SR
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHVSCRGNIDKSSLKTS
        AAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS  VKKQKQD++SCR NIDK  LKTS
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--VKKQKQDHVSCRGNIDKSSLKTS

SwissProt top hitse value%identityAlignment
Q5R6W3 Probable RNA-binding protein 184.3e-0425.35Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLAS---EKFGINTTDN
        +   FGK+   DFL+H  G   G+PRG+ F+ + +K                         Q+A+ A + ++GKLA  + LVVR A    +++  N  D 
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLAS---EKFGINTTDN

Query:  TSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRAL
              +   + L  S+  +     ++ + KI AI+ KL+ +
Subjt:  TSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRAL

Q66J99 Probable RNA-binding protein 189.5e-0426.29Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR
        +   FGK+   DFL+H  GP  G+PRG+ F+ + +K                          +A+ A   ++GK+A  + LVVR A  +  I   DN   
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSR

Query:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGG------GESSSVKKQKQDHVSCRGNIDKSSLKT
           +   + L  S+  +     ++ S KI AI+ KL+ +         G+SS    +  +   C     KSSLK+
Subjt:  AAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGG------GESSSVKKQKQDHVSCRGNIDKSSLKT

Q6PBM8 Probable RNA-binding protein 181.1e-0427.66Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLA-SEKFGINTTDNTS
        +   FGK+   DFL+H  GP  G+PRG+ F+ + +KE                         +A+ A + ++GKLA  + LVVR A +++F     +   
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLA-SEKFGINTTDNTS

Query:  RAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALE
         A+ E S      S+  +     ++ + KI AI+ KL+ +E
Subjt:  RAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALE

Q96H35 Probable RNA-binding protein 184.3e-0425.35Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLAS---EKFGINTTDN
        +   FGK+   DFL+H  G   G+PRG+ F+ + +K                         Q+A+ A + ++GKLA  + LVVR A    +++  N  D 
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLAS---EKFGINTTDN

Query:  TSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRAL
              +   + L  S+  +     ++ + KI AI+ KL+ +
Subjt:  TSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRAL

Q9CR83 Probable RNA-binding protein 187.3e-0425.35Show/hide
Query:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLAS---EKFGINTTDN
        +   FGK+   DFL+H  G   G+PRG+ F+ + +K                         Q+A+ A + ++GKLA  + LVVR A    +++  N  D 
Subjt:  MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLAS---EKFGINTTDN

Query:  TSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRAL
              +   + L  S+  +     ++ + KI AI+ KL+ +
Subjt:  TSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRAL

Arabidopsis top hitse value%identityAlignment
AT5G52545.1 unknown protein6.3e-1149.4Show/hide
Query:  MHGKLACGRPLVVRLASEK-FGINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQK
        MHG+LACGRPLVVRLASEK    ++ D++ R+  E ++ R    +    + GQM+R +K+ AIKNKL+ALE   E    KKQK
Subjt:  MHGKLACGRPLVVRLASEK-FGINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTCCTTTTGGGAAAATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCAAAGCGTGGAGAGCCACGGGGATTTGCTTTCATTGAATACAGCTCCAAGGA
GGTAAGTTGCATGGTTTACTACTCCATAGCCTCTGTCAAGCAATTCCTTATTTTTGCTTGTAAAGTGAGTATGCAGGACGCTAAATTGGCTAAAGAGAAGATGCATGGAA
AATTAGCTTGTGGTCGTCCATTGGTCGTACGCCTTGCGAGCGAGAAGTTCGGGATCAACACAACAGATAATACTTCAAGAGCAGCAGGCGAGTCGAGCAAACTGAGGCTC
GGTGGCAGCAATTTTGGACAGATGAATTATGGCCAGATGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAG
TGTGAAAAAACAGAAGCAAGATCACGTCAGTTGCAGAGGCAATATTGATAAGTCATCGCTCAAAACATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTCCTTTTGGGAAAATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCAAAGCGTGGAGAGCCACGGGGATTTGCTTTCATTGAATACAGCTCCAAGGA
GGTAAGTTGCATGGTTTACTACTCCATAGCCTCTGTCAAGCAATTCCTTATTTTTGCTTGTAAAGTGAGTATGCAGGACGCTAAATTGGCTAAAGAGAAGATGCATGGAA
AATTAGCTTGTGGTCGTCCATTGGTCGTACGCCTTGCGAGCGAGAAGTTCGGGATCAACACAACAGATAATACTTCAAGAGCAGCAGGCGAGTCGAGCAAACTGAGGCTC
GGTGGCAGCAATTTTGGACAGATGAATTATGGCCAGATGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAG
TGTGAAAAAACAGAAGCAAGATCACGTCAGTTGCAGAGGCAATATTGATAAGTCATCGCTCAAAACATCTTGA
Protein sequenceShow/hide protein sequence
MFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQDAKLAKEKMHGKLACGRPLVVRLASEKFGINTTDNTSRAAGESSKLRL
GGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTS