; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg038530 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038530
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmyb family transcription factor PHL5-like
Genome locationscaffold12:5872676..5874791
RNA-Seq ExpressionSpg038530
SyntenySpg038530
Gene Ontology termsGO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR025756 - MYB-CC type transcription factor, LHEQLE-containing domain
IPR044848 - PHR1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011652834.2 myb family transcription factor PHL5 [Cucumis sativus]3.5e-3848.43Show/hide
Query:  HITFCCFTFSCIPSYDYDMNLWNDQVLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNY
        +I  CCF +  +PSYDY M L     +M++   FC  S L SPFH+FYVFEG  TFSE E    SSFASSNT D   HF I SSS  S   Q  Q QSN 
Subjt:  HITFCCFTFSCIPSYDYDMNLWNDQVLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNY

Query:  SPKFSSEH-SWSWEELMG-NQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQR--------IFKSR------------------------------
        S +F  E+ SWS EELM  N+NKK K +IVSK RIKWT+ELHQ+F +C+DQLGGAQ+        + K++                              
Subjt:  SPKFSSEH-SWSWEELMG-NQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQR--------IFKSR------------------------------

Query:  --------------GKQLMEAVKQQLDTQSSLNEQLEVQKNLISAMEEQMKQLR
                      GKQLME V+QQL  QSSLNEQL+VQK LISA+EEQMKQLR
Subjt:  --------------GKQLMEAVKQQLDTQSSLNEQLEVQKNLISAMEEQMKQLR

XP_022152692.1 myb family transcription factor PHL5-like [Momordica charantia]1.7e-4550.42Show/hide
Query:  VLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYSPKFSSEHSWSWEELMGNQNKKSKP
        +LMSD  G   F PL SPF + Y FEGYD FSEAES FDSSFASS+ QDDQ H  + SSS DS Q+QGT+ QS+   +F+ EHSW WEEL  N+N+K K 
Subjt:  VLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYSPKFSSEHSWSWEELMGNQNKKSKP

Query:  TIVSKMRIKWTKELHQQFIDCIDQLGGAQR--------IFKSR--------------------------------------------GKQLMEAVKQQLD
         +VSK R+KWT+ELHQ+F+DC+++LGGAQ+        + K++                                            G QLME V+QQLD
Subjt:  TIVSKMRIKWTKELHQQFIDCIDQLGGAQR--------IFKSR--------------------------------------------GKQLMEAVKQQLD

Query:  TQSSLNEQLEVQKNLISAMEEQMKQLREILELRKET
        TQSSL+E LEVQKNLISAMEEQMKQLR IL+ R++T
Subjt:  TQSSLNEQLEVQKNLISAMEEQMKQLREILELRKET

XP_022934744.1 myb family transcription factor PHL5-like isoform X1 [Cucurbita moschata]8.6e-4551.06Show/hide
Query:  DQVLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQG-TQDQSNYSPKFSSEHSWSWEELMGNQNKK
        +Q+LMSDC G CQ S L SP  +FYVFEG +TFSEAE    SSF SSNT+DDQ H   SS + DS ++QG  Q+QS+   +FS + SWSWEELMGN+NKK
Subjt:  DQVLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQG-TQDQSNYSPKFSSEHSWSWEELMGNQNKK

Query:  SKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQRIF---------------------------------------------------KSRGKQLMEAVKQQ
        SK  I SK RIKWT+ELHQ+F++C+DQLGG Q+                                                     ++RGKQL+EA +Q 
Subjt:  SKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQRIF---------------------------------------------------KSRGKQLMEAVKQQ

Query:  LDTQSSLNEQLEVQKNLISAMEEQMKQLREILELR
        L TQSSLNEQLEVQKNLISA+EEQMKQLR +LE R
Subjt:  LDTQSSLNEQLEVQKNLISAMEEQMKQLREILELR

XP_038904769.1 myb family transcription factor PHL5-like isoform X1 [Benincasa hispida]3.4e-4152.74Show/hide
Query:  VLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYSPKFSSEH-SWSWEELMGNQNKKSK
        ++M+D  GF   S L SPFH+FYVFEGY TF E E    SSFASSNT D   HF ISSSS  SL  Q  Q QS+YS + + +H S S EELM   NKKSK
Subjt:  VLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYSPKFSSEH-SWSWEELMGNQNKKSK

Query:  PTIVSKMRIKWTKELHQQFIDCIDQLGGAQ----------------------------RIF-------------------------KSRGKQLMEAVKQQ
          IVSK RIKW+KELHQ+FIDC+DQLGGAQ                            RIF                         ++ GKQLMEAV+QQ
Subjt:  PTIVSKMRIKWTKELHQQFIDCIDQLGGAQ----------------------------RIF-------------------------KSRGKQLMEAVKQQ

Query:  LDTQSSLNEQLEVQKNLISAMEEQMKQLREILELRKE
        LDTQSSLNEQLEVQKNLISA+EEQMKQLR +LE R++
Subjt:  LDTQSSLNEQLEVQKNLISAMEEQMKQLREILELRKE

XP_038904770.1 myb family transcription factor PHL5-like isoform X2 [Benincasa hispida]2.6e-4152.97Show/hide
Query:  VLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYSPKFSSEH-SWSWEELMGNQNKKSK
        ++M+D  GF   S L SPFH+FYVFEGY TF E E    SSFASSNT D   HF ISSSS  SL  Q  Q QS+YS + + +H S S EELM   NKKSK
Subjt:  VLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYSPKFSSEH-SWSWEELMGNQNKKSK

Query:  PTIVSKMRIKWTKELHQQFIDCIDQLGGAQ----------------------------RIF------------------------KSRGKQLMEAVKQQL
          IVSK RIKW+KELHQ+FIDC+DQLGGAQ                            RIF                        ++ GKQLMEAV+QQL
Subjt:  PTIVSKMRIKWTKELHQQFIDCIDQLGGAQ----------------------------RIF------------------------KSRGKQLMEAVKQQL

Query:  DTQSSLNEQLEVQKNLISAMEEQMKQLREILELRKE
        DTQSSLNEQLEVQKNLISA+EEQMKQLR +LE R++
Subjt:  DTQSSLNEQLEVQKNLISAMEEQMKQLREILELRKE

TrEMBL top hitse value%identityAlignment
A0A6J1DGZ3 myb family transcription factor PHL5-like8.4e-4650.42Show/hide
Query:  VLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYSPKFSSEHSWSWEELMGNQNKKSKP
        +LMSD  G   F PL SPF + Y FEGYD FSEAES FDSSFASS+ QDDQ H  + SSS DS Q+QGT+ QS+   +F+ EHSW WEEL  N+N+K K 
Subjt:  VLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYSPKFSSEHSWSWEELMGNQNKKSKP

Query:  TIVSKMRIKWTKELHQQFIDCIDQLGGAQR--------IFKSR--------------------------------------------GKQLMEAVKQQLD
         +VSK R+KWT+ELHQ+F+DC+++LGGAQ+        + K++                                            G QLME V+QQLD
Subjt:  TIVSKMRIKWTKELHQQFIDCIDQLGGAQR--------IFKSR--------------------------------------------GKQLMEAVKQQLD

Query:  TQSSLNEQLEVQKNLISAMEEQMKQLREILELRKET
        TQSSL+E LEVQKNLISAMEEQMKQLR IL+ R++T
Subjt:  TQSSLNEQLEVQKNLISAMEEQMKQLREILELRKET

A0A6J1F2P3 myb family transcription factor PHL5-like isoform X21.9e-3448.8Show/hide
Query:  EGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQG-TQDQSNYSPKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQ
        +G +TFSEAE    SSF SSNT+DDQ H   SS + DS ++QG  Q+QS+   +FS + SWSWEELMGN+NKKSK  I SK RIKWT+ELHQ+F++C+DQ
Subjt:  EGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQG-TQDQSNYSPKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQ

Query:  LGGAQRIF----------------------------------------------------KSRGKQLMEAVKQQLDTQSSLNEQLEVQKNLISAMEEQMK
        LGG Q+                                                      ++RGKQL+EA +Q L TQSSLNEQLEVQKNLISA+EEQMK
Subjt:  LGGAQRIF----------------------------------------------------KSRGKQLMEAVKQQLDTQSSLNEQLEVQKNLISAMEEQMK

Query:  QLREILELR
        QLR +LE R
Subjt:  QLREILELR

A0A6J1F3G0 myb family transcription factor PHL5-like isoform X14.2e-4551.06Show/hide
Query:  DQVLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQG-TQDQSNYSPKFSSEHSWSWEELMGNQNKK
        +Q+LMSDC G CQ S L SP  +FYVFEG +TFSEAE    SSF SSNT+DDQ H   SS + DS ++QG  Q+QS+   +FS + SWSWEELMGN+NKK
Subjt:  DQVLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQG-TQDQSNYSPKFSSEHSWSWEELMGNQNKK

Query:  SKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQRIF---------------------------------------------------KSRGKQLMEAVKQQ
        SK  I SK RIKWT+ELHQ+F++C+DQLGG Q+                                                     ++RGKQL+EA +Q 
Subjt:  SKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQRIF---------------------------------------------------KSRGKQLMEAVKQQ

Query:  LDTQSSLNEQLEVQKNLISAMEEQMKQLREILELR
        L TQSSLNEQLEVQKNLISA+EEQMKQLR +LE R
Subjt:  LDTQSSLNEQLEVQKNLISAMEEQMKQLREILELR

A0A6J1IWZ7 myb family transcription factor PHL5-like isoform X14.6e-3647.32Show/hide
Query:  QFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQG-TQDQSNYSPKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIK
        + S L SP  +FYVFEG +TFSEAE    SSF SSNT+DDQ H   SS + DS ++QG  Q+QS+   + + + SWSWEELMGN+NKKSK  I  K RIK
Subjt:  QFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQG-TQDQSNYSPKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIK

Query:  WTKELHQQFIDCIDQLGGAQRIF----------------------------------------------------KSRGKQLMEAVKQQLDTQSSLNEQL
        WT+ELHQ+F++C+DQLGG Q+                                                      ++RGKQL+E+ +Q L T SSLNEQL
Subjt:  WTKELHQQFIDCIDQLGGAQRIF----------------------------------------------------KSRGKQLMEAVKQQLDTQSSLNEQL

Query:  EVQKNLISAMEEQMKQLREILELR
        EVQKNLISA+EEQMKQLR +LE R
Subjt:  EVQKNLISAMEEQMKQLREILELR

A0A6J1J569 myb family transcription factor PHL5-like isoform X23.5e-3647.53Show/hide
Query:  QFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQG-TQDQSNYSPKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIK
        + S L SP  +FYVFEG +TFSEAE    SSF SSNT+DDQ H   SS + DS ++QG  Q+QS+   + + + SWSWEELMGN+NKKSK  I  K RIK
Subjt:  QFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQG-TQDQSNYSPKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIK

Query:  WTKELHQQFIDCIDQLGGAQRIF---------------------------------------------------KSRGKQLMEAVKQQLDTQSSLNEQLE
        WT+ELHQ+F++C+DQLGG Q+                                                     ++RGKQL+E+ +Q L T SSLNEQLE
Subjt:  WTKELHQQFIDCIDQLGGAQRIF---------------------------------------------------KSRGKQLMEAVKQQLDTQSSLNEQLE

Query:  VQKNLISAMEEQMKQLREILELR
        VQKNLISA+EEQMKQLR +LE R
Subjt:  VQKNLISAMEEQMKQLREILELR

SwissProt top hitse value%identityAlignment
Q0WVU3 Myb family transcription factor PHL52.0e-0727.09Show/hide
Query:  AESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYS-PKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQRI-
        + + +  SF +S+   +      S+S+   L +  +Q Q   S P+FSS  S+S             P  V+K RI+WT++LH++F++C+++LGGA +  
Subjt:  AESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYS-PKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQRI-

Query:  --------------------------------------FKSR-------------GKQLMEAVKQQLDTQSSLNEQLEVQKNLISAMEEQMKQLREILEL
                                              F+ R             G Q+ EA++ QLD Q  L+EQLE+Q+NL   +EEQ KQL+ ++E 
Subjt:  --------------------------------------FKSR-------------GKQLMEAVKQQLDTQSSLNEQLEVQKNLISAMEEQMKQLREILEL

Query:  RKE
        +++
Subjt:  RKE

Arabidopsis top hitse value%identityAlignment
AT3G04450.1 Homeodomain-like superfamily protein3.5e-0429.29Show/hide
Query:  NKKSKP--TIVSKMRIKWTKELHQQFIDCIDQLGGAQRIFKSRGKQLMEA-------VKQQLDTQSSLNEQLEVQKNLISAMEEQMKQLREILELRKET
        N KS P  ++ SK R++WT ELH+ F++ I+QLGG++R       +L+ +       VK  L    +   + E+ K+    + + +K + +I  L  +T
Subjt:  NKKSKP--TIVSKMRIKWTKELHQQFIDCIDQLGGAQRIFKSRGKQLMEA-------VKQQLDTQSSLNEQLEVQKNLISAMEEQMKQLREILELRKET

AT3G04450.2 Homeodomain-like superfamily protein3.5e-0429.29Show/hide
Query:  NKKSKP--TIVSKMRIKWTKELHQQFIDCIDQLGGAQRIFKSRGKQLMEA-------VKQQLDTQSSLNEQLEVQKNLISAMEEQMKQLREILELRKET
        N KS P  ++ SK R++WT ELH+ F++ I+QLGG++R       +L+ +       VK  L    +   + E+ K+    + + +K + +I  L  +T
Subjt:  NKKSKP--TIVSKMRIKWTKELHQQFIDCIDQLGGAQRIFKSRGKQLMEA-------VKQQLDTQSSLNEQLEVQKNLISAMEEQMKQLREILELRKET

AT5G06800.1 myb-like HTH transcriptional regulator family protein1.4e-0827.09Show/hide
Query:  AESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYS-PKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQRI-
        + + +  SF +S+   +      S+S+   L +  +Q Q   S P+FSS  S+S             P  V+K RI+WT++LH++F++C+++LGGA +  
Subjt:  AESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYS-PKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQRI-

Query:  --------------------------------------FKSR-------------GKQLMEAVKQQLDTQSSLNEQLEVQKNLISAMEEQMKQLREILEL
                                              F+ R             G Q+ EA++ QLD Q  L+EQLE+Q+NL   +EEQ KQL+ ++E 
Subjt:  --------------------------------------FKSR-------------GKQLMEAVKQQLDTQSSLNEQLEVQKNLISAMEEQMKQLREILEL

Query:  RKE
        +++
Subjt:  RKE

AT5G06800.2 myb-like HTH transcriptional regulator family protein5.5e-0530.61Show/hide
Query:  AESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYS-PKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQR
        + + +  SF +S+   +      S+S+   L +  +Q Q   S P+FSS  S+S             P  V+K RI+WT++LH++F++C+++LGGA +
Subjt:  AESRFDSSFASSNTQDDQRHFRISSSSSDSLQYQGTQDQSNYS-PKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQR

AT5G29000.4 Homeodomain-like superfamily protein2.7e-0442.22Show/hide
Query:  SWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQR
        S ++L G  +  S  T  SK R++WT ELH+ F++ ++QLGG++R
Subjt:  SWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGTACATGACGACACTATGTCATTATCATTACAAGAAAGTGGATCAACATCCTACATCTTCCTACATATAACGTTTTGTTGCTTTACATTTTCCTGTATTCCTTC
ATATGATTATGATATGAACTTGTGGAACGATCAAGTGTTGATGAGTGATTGCTATGGATTTTGTCAATTCTCCCCTTTGGTGTCACCATTTCACAATTTCTATGTCTTTG
AAGGATACGATACTTTTTCAGAAGCTGAGTCTCGCTTCGACTCTTCGTTTGCATCCTCCAACACCCAAGATGATCAACGCCACTTTCGTATCTCATCTTCGAGTTCTGAC
TCACTACAGTATCAAGGAACTCAAGATCAATCGAACTACTCTCCGAAATTTAGTAGTGAGCACTCTTGGTCATGGGAGGAGTTGATGGGAAACCAGAACAAAAAGTCAAA
ACCGACCATCGTTTCGAAGATGCGAATTAAATGGACGAAAGAACTTCACCAACAATTCATCGATTGCATCGATCAACTTGGAGGTGCTCAAAGAATTTTCAAAAGCAGAG
GGAAGCAGCTGATGGAAGCAGTGAAACAACAACTTGATACTCAGAGTAGTTTGAATGAACAATTGGAGGTTCAGAAAAACTTGATCTCAGCCATGGAAGAACAAATGAAG
CAACTGAGAGAAATTCTAGAACTAAGAAAGGAAACCTGTTGTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGTACATGACGACACTATGTCATTATCATTACAAGAAAGTGGATCAACATCCTACATCTTCCTACATATAACGTTTTGTTGCTTTACATTTTCCTGTATTCCTTC
ATATGATTATGATATGAACTTGTGGAACGATCAAGTGTTGATGAGTGATTGCTATGGATTTTGTCAATTCTCCCCTTTGGTGTCACCATTTCACAATTTCTATGTCTTTG
AAGGATACGATACTTTTTCAGAAGCTGAGTCTCGCTTCGACTCTTCGTTTGCATCCTCCAACACCCAAGATGATCAACGCCACTTTCGTATCTCATCTTCGAGTTCTGAC
TCACTACAGTATCAAGGAACTCAAGATCAATCGAACTACTCTCCGAAATTTAGTAGTGAGCACTCTTGGTCATGGGAGGAGTTGATGGGAAACCAGAACAAAAAGTCAAA
ACCGACCATCGTTTCGAAGATGCGAATTAAATGGACGAAAGAACTTCACCAACAATTCATCGATTGCATCGATCAACTTGGAGGTGCTCAAAGAATTTTCAAAAGCAGAG
GGAAGCAGCTGATGGAAGCAGTGAAACAACAACTTGATACTCAGAGTAGTTTGAATGAACAATTGGAGGTTCAGAAAAACTTGATCTCAGCCATGGAAGAACAAATGAAG
CAACTGAGAGAAATTCTAGAACTAAGAAAGGAAACCTGTTGTGTTTAG
Protein sequenceShow/hide protein sequence
MLVHDDTMSLSLQESGSTSYIFLHITFCCFTFSCIPSYDYDMNLWNDQVLMSDCYGFCQFSPLVSPFHNFYVFEGYDTFSEAESRFDSSFASSNTQDDQRHFRISSSSSD
SLQYQGTQDQSNYSPKFSSEHSWSWEELMGNQNKKSKPTIVSKMRIKWTKELHQQFIDCIDQLGGAQRIFKSRGKQLMEAVKQQLDTQSSLNEQLEVQKNLISAMEEQMK
QLREILELRKETCCV