; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg038570 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038570
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold12:5963890..5964671
RNA-Seq ExpressionSpg038570
SyntenySpg038570
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]7.4e-1233.8Show/hide
Query:  WSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLS
        WS PPP  G +KLN D +W +   R GVGW++RD +G  +  G     R  S    E++ ++E L   LE G +    + VESD++ ++K LN E V   
Subjt:  WSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLS

Query:  EAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL
        E + +L D+  L+ +   + F + PR  +++A+ +A  A R+
Subjt:  EAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL

CAB4273082.1 unnamed protein product [Prunus armeniaca]2.8e-1134.31Show/hide
Query:  PPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLSEAKAV
        PP G LK+N DA+W S  +  GVGW++RDS G  +  G K   RG S  AME++ I+E L A ++SG    + + VESD+++V++ +  E         +
Subjt:  PPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLSEAKAV

Query:  LSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL
        + DI+ L  +     F + PR  +++A+ +A   +R+
Subjt:  LSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL

CAB4279811.1 unnamed protein product [Prunus armeniaca]7.4e-1234.31Show/hide
Query:  PGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWEC-VDLSEAKAV
        P G LK+N DA+W S  +  GVGW++RDS G  +  GCK   RG S  AME++ I+E L A ++SG    + + VESD++++++ L  E  +D++  + +
Subjt:  PGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWEC-VDLSEAKAV

Query:  LSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL
        + DI+ L  +     F + PR  +++A+ +    +R+
Subjt:  LSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL

CAB4303756.1 unnamed protein product [Prunus armeniaca]8.2e-1134.51Show/hide
Query:  AWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDL
        +W  PPP  G LK+N DA+W +     GVGW+IRDS G  L  G +    G S   ME   I+  L    E  N     IIVESD+ + +  LN      
Subjt:  AWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDL

Query:  SEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATR
        S+ + ++ DI  L + +  +SF F PR+ +++A+ +A   ++
Subjt:  SEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATR

CAB4321714.1 unnamed protein product [Prunus armeniaca]9.0e-1033.1Show/hide
Query:  AWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDL
        +W  PPP  G LK+N DA+W +     GVGW+IRDS    L  G +    G S   ME   I+  L    E  N     IIVESD+ + +  LN      
Subjt:  AWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDL

Query:  SEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATR
        S+ + ++ DI  L + +  +SF F PR+ +++A+ +    ++
Subjt:  SEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATR

TrEMBL top hitse value%identityAlignment
A0A4Y1R838 Ribonuclease H-like superfamily protein3.6e-1233.8Show/hide
Query:  WSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLS
        WS PPP  G +KLN D +W +   R GVGW++RD +G  +  G     R  S    E++ ++E L   LE G +    + VESD++ ++K LN E V   
Subjt:  WSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLS

Query:  EAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL
        E + +L D+  L+ +   + F + PR  +++A+ +A  A R+
Subjt:  EAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL

A0A6J5UAY2 Reverse transcriptase domain-containing protein1.4e-1134.31Show/hide
Query:  PPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLSEAKAV
        PP G LK+N DA+W S  +  GVGW++RDS G  +  G K   RG S  AME++ I+E L A ++SG    + + VESD+++V++ +  E         +
Subjt:  PPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLSEAKAV

Query:  LSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL
        + DI+ L  +     F + PR  +++A+ +A   +R+
Subjt:  LSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL

A0A6J5UV01 Reverse transcriptase domain-containing protein3.6e-1234.31Show/hide
Query:  PGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWEC-VDLSEAKAV
        P G LK+N DA+W S  +  GVGW++RDS G  +  GCK   RG S  AME++ I+E L A ++SG    + + VESD++++++ L  E  +D++  + +
Subjt:  PGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWEC-VDLSEAKAV

Query:  LSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL
        + DI+ L  +     F + PR  +++A+ +    +R+
Subjt:  LSDIEALASKVGAISFNFCPRAYDRSANCLARLATRL

A0A6J5WPU6 Reverse transcriptase domain-containing protein4.0e-1134.51Show/hide
Query:  AWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDL
        +W  PPP  G LK+N DA+W +     GVGW+IRDS G  L  G +    G S   ME   I+  L    E  N     IIVESD+ + +  LN      
Subjt:  AWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDL

Query:  SEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATR
        S+ + ++ DI  L + +  +SF F PR+ +++A+ +A   ++
Subjt:  SEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATR

A0A6J5YDN0 Uncharacterized protein4.4e-1033.1Show/hide
Query:  AWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDL
        +W  PPP  G LK+N DA+W +     GVGW+IRDS    L  G +    G S   ME   I+  L    E  N     IIVESD+ + +  LN      
Subjt:  AWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDL

Query:  SEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATR
        S+ + ++ DI  L + +  +SF F PR+ +++A+ +    ++
Subjt:  SEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G04420.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0424.36Show/hide
Query:  LNQILIAYASENHRN-HGAWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIV
        LN   +     N  + H  W  PP   G +K N D S++   ++   GW+IRD  G    KG  +   G    A+ES+ ++  + A   + +     +I 
Subjt:  LNQILIAYASENHRN-HGAWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIV

Query:  ESDAIEVVKGLNWECVDLSEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLAR
        E D+ +V + LN + +    A   + +  + + +   + F++ PR  ++ A+ LA+
Subjt:  ESDAIEVVKGLNWECVDLSEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLAR

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0830.15Show/hide
Query:  PPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLN----WECVDLSE
        PP   +K N DA+W     R G+GWI+R+  G  L  G +   R  ++   E + ++    A L     +   II ESDA  +V  LN    W  +    
Subjt:  PPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLN----WECVDLSE

Query:  AKAVLSDIEALASKVGAISFNFCPRAYDRSANCLAR
         +  L DI+ L      + F F PR  ++ A+ +AR
Subjt:  AKAVLSDIEALASKVGAISFNFCPRAYDRSANCLAR

AT3G09510.1 Ribonuclease H-like superfamily protein1.9e-0527.41Show/hide
Query:  PPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDA---IEVVKGLNWECVDLSEA
        PP   +K N DA +D        GWIIR+  G+P+  G  K     +    E++ +   LQ     G      + +E D    I ++ G+++     S  
Subjt:  PPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDA---IEVVKGLNWECVDLSEA

Query:  KAVLSDIEALASKVGAISFNFCPRAYDRSANCLAR
           L DI   A+K  +I F F  R  ++ A+ LA+
Subjt:  KAVLSDIEALASKVGAISFNFCPRAYDRSANCLAR

AT4G29090.1 Ribonuclease H-like superfamily protein3.1e-0827.08Show/hide
Query:  NHRNHGAWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLN
        N  + G W PPP     +K N DA+W+    R G+GW++R+  G     G +   +  S+   E + ++    A L         +I ESD+  +++ LN
Subjt:  NHRNHGAWSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLN

Query:  WECVDLSEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLAR
         + +     K  + D++ L S+   + F F PR  +  A  +AR
Subjt:  WECVDLSEAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLAR

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.3e-0526.24Show/hide
Query:  WSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLS
        WS  PP    LK N DAS        G+GWI+R+S G+ +  G  K+    + +  E   +   +QA    G+     +I E D   + + +N +  +  
Subjt:  WSPPPPPGGTLKLNVDASWDSSCRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLS

Query:  EAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATR
          +  L  I++      +I F+F  R  +  A+ LA+ A +
Subjt:  EAKAVLSDIEALASKVGAISFNFCPRAYDRSANCLARLATR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAGGGAGCAACCATCACCCTATGGACCATTTGGAATTTCAGAAAACAAGGCAACAATGGACAATGATCCTGATTGCGTATGCCTCGGAGAATCATCGGAATCATT
TGGAATTTCAGAAAACAAGGCAACAATGGACAATGGTACGACTAATTTCAACATGCTAGCCAAAGATATCAAAAGGAATTTCATCGGGCAAAGTAAAAGATTGAATCAGA
TCCTGATTGCGTATGCCTCGGAGAATCATCGGAATCATGGAGCTTGGTCTCCCCCCCCCCCCCCCGGCGGTACTCTCAAACTGAATGTGGATGCCTCATGGGATAGCTCT
TGCAGGAGAGAGGGTGTTGGGTGGATTATCCGTGATTCCCTTGGATCTCCTCTAGGCAAAGGATGCAAAAAATGGGATCGGGGTTGGTCAATCAAGGCTATGGAAAGTCA
AGTGATTAAAGAAGGGCTTCAAGCTTACTTGGAATCCGGAAACAACGATAGAGCCCCAATCATCGTGGAATCAGACGCGATAGAGGTCGTCAAAGGCCTGAATTGGGAGT
GCGTCGATCTATCGGAAGCCAAGGCGGTGCTGTCAGACATTGAAGCTCTGGCATCCAAGGTTGGGGCGATCTCTTTTAATTTCTGCCCTCGGGCATATGATAGGAGCGCG
AATTGTCTCGCTCGTTTGGCGACTAGGCTAAGGCCGCTGGGGTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAGGGAGCAACCATCACCCTATGGACCATTTGGAATTTCAGAAAACAAGGCAACAATGGACAATGATCCTGATTGCGTATGCCTCGGAGAATCATCGGAATCATT
TGGAATTTCAGAAAACAAGGCAACAATGGACAATGGTACGACTAATTTCAACATGCTAGCCAAAGATATCAAAAGGAATTTCATCGGGCAAAGTAAAAGATTGAATCAGA
TCCTGATTGCGTATGCCTCGGAGAATCATCGGAATCATGGAGCTTGGTCTCCCCCCCCCCCCCCCGGCGGTACTCTCAAACTGAATGTGGATGCCTCATGGGATAGCTCT
TGCAGGAGAGAGGGTGTTGGGTGGATTATCCGTGATTCCCTTGGATCTCCTCTAGGCAAAGGATGCAAAAAATGGGATCGGGGTTGGTCAATCAAGGCTATGGAAAGTCA
AGTGATTAAAGAAGGGCTTCAAGCTTACTTGGAATCCGGAAACAACGATAGAGCCCCAATCATCGTGGAATCAGACGCGATAGAGGTCGTCAAAGGCCTGAATTGGGAGT
GCGTCGATCTATCGGAAGCCAAGGCGGTGCTGTCAGACATTGAAGCTCTGGCATCCAAGGTTGGGGCGATCTCTTTTAATTTCTGCCCTCGGGCATATGATAGGAGCGCG
AATTGTCTCGCTCGTTTGGCGACTAGGCTAAGGCCGCTGGGGTGTTGA
Protein sequenceShow/hide protein sequence
MQREQPSPYGPFGISENKATMDNDPDCVCLGESSESFGISENKATMDNGTTNFNMLAKDIKRNFIGQSKRLNQILIAYASENHRNHGAWSPPPPPGGTLKLNVDASWDSS
CRREGVGWIIRDSLGSPLGKGCKKWDRGWSIKAMESQVIKEGLQAYLESGNNDRAPIIVESDAIEVVKGLNWECVDLSEAKAVLSDIEALASKVGAISFNFCPRAYDRSA
NCLARLATRLRPLGC