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Spg038755 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038755
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold12:5166437..5166943
RNA-Seq ExpressionSpg038755
SyntenySpg038755
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8776165.1 hypothetical protein D1007_51201 [Hordeum vulgare]5.3e-0438.14Show/hide
Query:  IKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCPRECNRVAHTLARAASSSPT
        + + EA A+ +GL   LL  E       +  I VESD  +VI  + L+   L     + EE + L +    + FSFCPRE N VAHTLAR A  + T
Subjt:  IKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCPRECNRVAHTLARAASSSPT

KAF7821986.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]6.9e-0432.14Show/hide
Query:  ICAGHQKMNKEWSIKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCPRECNRVAHT
        + A  +K+    +I+ +EALA++EG+K   L+            I +ESDA  V+  LN  + D+S    ++EE  +L     +++F++  RE N VAHT
Subjt:  ICAGHQKMNKEWSIKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCPRECNRVAHT

Query:  LARAASSSPTSS
        LA +  + P +S
Subjt:  LARAASSSPTSS

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]9.0e-0434.07Show/hide
Query:  ICAGHQKMNKEWSIKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCP
        IC   +++ ++W +K LE  A++EGLK YLL++E   + H  P I++     E+ + LN    DL E  ++++E  DL   AG ++F   P
Subjt:  ICAGHQKMNKEWSIKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCP

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.7e-0535.29Show/hide
Query:  MICAGHQKMNKEWSIKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCPRECNRVAH
        ++ AG++ +    ++K LEA AI+EGL+    L        ++ P+ +E+D+AEV   LN + EDL++T  ++EE  +L      LAF+   RE N  AH
Subjt:  MICAGHQKMNKEWSIKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCPRECNRVAH

Query:  TLARAASSSPTSSIVYSSF
        +LA+ AS    S I    F
Subjt:  TLARAASSSPTSSIVYSSF

TrEMBL top hitse value%identityAlignment
A0A6J1DNV9 uncharacterized protein LOC1110224031.8e-0535.29Show/hide
Query:  MICAGHQKMNKEWSIKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCPRECNRVAH
        ++ AG++ +    ++K LEA AI+EGL+    L        ++ P+ +E+D+AEV   LN + EDL++T  ++EE  +L      LAF+   RE N  AH
Subjt:  MICAGHQKMNKEWSIKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCPRECNRVAH

Query:  TLARAASSSPTSSIVYSSF
        +LA+ AS    S I    F
Subjt:  TLARAASSSPTSSIVYSSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTGTGCAGGCCACCAGAAAATGAACAAAGAATGGTCAATTAAAGCCCTCGAAGCTCTAGCCATTGTCGAAGGATTAAAAGCATACCTGTTGCTGAAGGAGAAAGA
TGATTTCCGACATCTAATTCCCCCAATTTGGGTCGAATCCGACGCCGCCGAAGTGATTAAATTCCTCAATCTAGAGAGCGAAGACCTTTCGGAAACCAAACACATTCTGG
AAGAAGCGGCTGATCTCGGTCGCAAGGCAGGGACATTGGCGTTCTCGTTCTGTCCAAGAGAATGCAATCGCGTGGCTCACACCCTTGCTCGAGCTGCAAGTTCGTCCCCA
ACATCTAGCATAGTTTACTCTAGCTTTCGTTTCTCTTTGATCGCCAATTTTGAGCAATCCCCATATTCTTCTCTCGAAGATGTCGTTTTTTGGAGGGATTCTATTGTTCC
CACTTGGCTTTCCTTTGCTATTAATGAGGATTTTTGTATACCTAACTTGGGTTCTCTTTATTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTGTGCAGGCCACCAGAAAATGAACAAAGAATGGTCAATTAAAGCCCTCGAAGCTCTAGCCATTGTCGAAGGATTAAAAGCATACCTGTTGCTGAAGGAGAAAGA
TGATTTCCGACATCTAATTCCCCCAATTTGGGTCGAATCCGACGCCGCCGAAGTGATTAAATTCCTCAATCTAGAGAGCGAAGACCTTTCGGAAACCAAACACATTCTGG
AAGAAGCGGCTGATCTCGGTCGCAAGGCAGGGACATTGGCGTTCTCGTTCTGTCCAAGAGAATGCAATCGCGTGGCTCACACCCTTGCTCGAGCTGCAAGTTCGTCCCCA
ACATCTAGCATAGTTTACTCTAGCTTTCGTTTCTCTTTGATCGCCAATTTTGAGCAATCCCCATATTCTTCTCTCGAAGATGTCGTTTTTTGGAGGGATTCTATTGTTCC
CACTTGGCTTTCCTTTGCTATTAATGAGGATTTTTGTATACCTAACTTGGGTTCTCTTTATTATTGA
Protein sequenceShow/hide protein sequence
MICAGHQKMNKEWSIKALEALAIVEGLKAYLLLKEKDDFRHLIPPIWVESDAAEVIKFLNLESEDLSETKHILEEAADLGRKAGTLAFSFCPRECNRVAHTLARAASSSP
TSSIVYSSFRFSLIANFEQSPYSSLEDVVFWRDSIVPTWLSFAINEDFCIPNLGSLYY