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Spg038756 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038756
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold12:3647534..3649221
RNA-Seq ExpressionSpg038756
SyntenySpg038756
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0050896 - response to stimulus (biological process)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-0743.48Show/hide
Query:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRL
        FW  +W+    LSN +PRLY L+   NA + E+W+   + WNL PRR LN+ EI  W NL  +L  + L
Subjt:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRL

KAG5622408.1 hypothetical protein H5410_007626 [Solanum commersonii]3.6e-0648.21Show/hide
Query:  TFFWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEI
        T FWKD W++   L  LFP LY ++ NP+ARV++ W  TE  W++S RR LN++E+
Subjt:  TFFWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEI

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-0743.48Show/hide
Query:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRL
        FW  +W+    LSN +PRLY L+   NA + E+W+   + WNL PRR LN+ EI  W NL  +L  + L
Subjt:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRL

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-0643.33Show/hide
Query:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANL
        FW   W     LS+ +PRLY L+TN  + + ++WN+T   W+L+PRR L E+E+  WA L
Subjt:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANL

XP_038891595.1 uncharacterized protein LOC120080986 [Benincasa hispida]7.5e-1253.52Show/hide
Query:  TFFWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRL
        T  W DSWLN  ILS +FPRLYRL   P A +A +WNS+  AW+L+ R +L E EI EW  LS+ L  +RL
Subjt:  TFFWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRL

TrEMBL top hitse value%identityAlignment
A0A2G3BE68 26S proteasome non-ATPase regulatory subunit 12-like protein B2.3e-0649.15Show/hide
Query:  TFFWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEW
        T FWK+ W     LSNLFPRL+ +  NPN+++ +VW  T   WNL  R  LN++E IEW
Subjt:  TFFWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEW

A0A438IBW9 Putative ribonuclease H protein2.3e-0640Show/hide
Query:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNST--ESAWNLSPRRHLNEFEIIEWANLSYLLSPIR
        FW D W     LS +FP+L+ L  + NA+V+EVW+S+  + +WNLS  R  N++E+ +  N+  LL   R
Subjt:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNST--ESAWNLSPRRHLNEFEIIEWANLSYLLSPIR

A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein5.4e-0843.48Show/hide
Query:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRL
        FW  +W+    LSN +PRLY L+   NA + E+W+   + WNL PRR LN+ EI  W NL  +L  + L
Subjt:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRL

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein5.4e-0843.48Show/hide
Query:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRL
        FW  +W+    LSN +PRLY L+   NA + E+W+   + WNL PRR LN+ EI  W NL  +L  + L
Subjt:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRL

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.3e-0643.33Show/hide
Query:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANL
        FW   W     LS+ +PRLY L+TN  + + ++WN+T   W+L+PRR L E+E+  WA L
Subjt:  FWKDSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGCTAATCAAAGCAGATTCAGACCAAACGGAGATCTCCTTTTTGGTCGACGAAATCGAGCGCCTGATTGCCGAGTATGACAAGATTTCTTTCGTCCACAACCCGCAATC
GCAAAATGAGGAAGCGCACCATCTGGCGCGTACCGCTGTGTTCGGAAGTTTTGGGTCTTCTTTTCGGTTTTTGGATGCCTCTTCCACTTCGGAAGAAGGCCAAGCTGCTC
CAGTAACCAGATTTCCGTCGGTGAAGCATCGGTCTATTGGATCAGGTTCCAACCATGTTGCCCCAGACAATTCCACATTCAGCTTCACGGCTGGCACATTTTTTTGGAAG
GATTCATGGCTAAATGGAGTGATTCTCTCAAATCTCTTCCCTCGCCTTTATCGGTTAACTACCAATCCAAACGCCAGGGTTGCAGAAGTATGGAACTCTACAGAATCAGC
ATGGAATCTGAGTCCTCGTCGTCACCTTAATGAGTTTGAGATTATTGAATGGGCAAATTTATCCTATCTTCTGTCTCCTATTCGACTTCGGGATATGAATAGCATCTAA
mRNA sequenceShow/hide mRNA sequence
CTGCTAATCAAAGCAGATTCAGACCAAACGGAGATCTCCTTTTTGGTCGACGAAATCGAGCGCCTGATTGCCGAGTATGACAAGATTTCTTTCGTCCACAACCCGCAATC
GCAAAATGAGGAAGCGCACCATCTGGCGCGTACCGCTGTGTTCGGAAGTTTTGGGTCTTCTTTTCGGTTTTTGGATGCCTCTTCCACTTCGGAAGAAGGCCAAGCTGCTC
CAGTAACCAGATTTCCGTCGGTGAAGCATCGGTCTATTGGATCAGGTTCCAACCATGTTGCCCCAGACAATTCCACATTCAGCTTCACGGCTGGCACATTTTTTTGGAAG
GATTCATGGCTAAATGGAGTGATTCTCTCAAATCTCTTCCCTCGCCTTTATCGGTTAACTACCAATCCAAACGCCAGGGTTGCAGAAGTATGGAACTCTACAGAATCAGC
ATGGAATCTGAGTCCTCGTCGTCACCTTAATGAGTTTGAGATTATTGAATGGGCAAATTTATCCTATCTTCTGTCTCCTATTCGACTTCGGGATATGAATAGCATCTAA
Protein sequenceShow/hide protein sequence
LLIKADSDQTEISFLVDEIERLIAEYDKISFVHNPQSQNEEAHHLARTAVFGSFGSSFRFLDASSTSEEGQAAPVTRFPSVKHRSIGSGSNHVAPDNSTFSFTAGTFFWK
DSWLNGVILSNLFPRLYRLTTNPNARVAEVWNSTESAWNLSPRRHLNEFEIIEWANLSYLLSPIRLRDMNSI