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Spg038772 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg038772
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranscription factor UPBEAT1
Genome locationscaffold12:4448124..4448417
RNA-Seq ExpressionSpg038772
SyntenySpg038772
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038125.1 basic helix-loop-helix protein [Cucumis melo var. makuwa]4.1e-2579.76Show/hide
Query:  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        D VSDRRI KQV  +K    SR    SEKR C KRIR+LRKMIPKSE+MELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

KAG6787023.1 hypothetical protein POTOM_008650 [Populus tomentosa]1.6e-0864.71Show/hide
Query:  KRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        +R+R L+K+IP SE+M L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Subjt:  KRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

KGN58133.1 hypothetical protein Csa_017541 [Cucumis sativus]1.1e-2579.76Show/hide
Query:  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        D VSDRRI KQV  +K    SRS   SEKR C KRIRRL+KM+PKSE+MELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

XP_021654625.1 transcription factor UPBEAT1 [Hevea brasiliensis]2.0e-0849.4Show/hide
Query:  RVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        RVS ++  ++V I       RSRS++       R+R L+K+IP SE+  L GLFRETADYI+ LQM+V++MQ +V VL GSDE
Subjt:  RVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

XP_034911859.1 transcription factor UPBEAT1-like [Populus alba]1.6e-0864.71Show/hide
Query:  KRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        +R+R L+K+IP SE+M L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Subjt:  KRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

TrEMBL top hitse value%identityAlignment
A0A0A0L8J6 Uncharacterized protein5.2e-2679.76Show/hide
Query:  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        D VSDRRI KQV  +K    SRS   SEKR C KRIRRL+KM+PKSE+MELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

A0A2C9VSB7 Uncharacterized protein3.8e-0844.3Show/hide
Query:  RRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        RR+++    R + ++SR+ +        +R+R L+K++P SE+  L GLFR+TADYI+ LQM+V++MQ +V VL GSDE
Subjt:  RRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

A0A4V5ZXB7 Uncharacterized protein7.6e-0964.71Show/hide
Query:  KRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        +R+R L+K+IP SE+M L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Subjt:  KRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

A0A5A7T9M0 Basic helix-loop-helix protein2.0e-2579.76Show/hide
Query:  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
        D VSDRRI KQV  +K    SR    SEKR C KRIR+LRKMIPKSE+MELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE
Subjt:  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE

B9GSV5 Uncharacterized protein3.8e-0839.22Show/hide
Query:  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFK------------------RIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGS
        ++VS+ +  ++  +R+Q     +RS+   R   K                  R+R L+K+IP SE+M L+GLFRETADYI+ LQM+V++MQ +V VL GS
Subjt:  DRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFK------------------RIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGS

Query:  DE
        D+
Subjt:  DE

SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT12.1e-0846.67Show/hide
Query:  RRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETME-LNGLFRETADYIVWLQMKVRMMQALVHVL
        R +VK++ IR  P  S   SR   RA  +R++ L++++P ++T E L+GLFR+TADYI+ L+MKV++MQ +V VL
Subjt:  RRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETME-LNGLFRETADYIVWLQMKVRMMQALVHVL

Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators1.5e-0946.67Show/hide
Query:  RRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETME-LNGLFRETADYIVWLQMKVRMMQALVHVL
        R +VK++ IR  P  S   SR   RA  +R++ L++++P ++T E L+GLFR+TADYI+ L+MKV++MQ +V VL
Subjt:  RRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETME-LNGLFRETADYIVWLQMKVRMMQALVHVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTTGGGCTCGAGAACATAGCGACGACTCTGATGATCGAGTTTCGGACAGGCGAATCGTAAAACAAGTCGAGATCAGGAAGCAACCGACGGCGTCGAGGTCGAG
GTCGAGGTCGGAGAAGAGGGCTTGCTTTAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAAACTATGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATT
ATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTGAATGGCTCTGATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTTGGGCTCGAGAACATAGCGACGACTCTGATGATCGAGTTTCGGACAGGCGAATCGTAAAACAAGTCGAGATCAGGAAGCAACCGACGGCGTCGAGGTCGAG
GTCGAGGTCGGAGAAGAGGGCTTGCTTTAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGAGTGAAACTATGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATT
ATATTGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTGAATGGCTCTGATGAATGA
Protein sequenceShow/hide protein sequence
MEVWAREHSDDSDDRVSDRRIVKQVEIRKQPTASRSRSRSEKRACFKRIRRLRKMIPKSETMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE